Query= MSMg01no514_c12.b1 MSMg01no514_c12.b1 CHROMAT_FILE:
MSMg01no514_c12.b1 PHD_FILE: MSMg01no514_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:56 2005
(698 letters)
>mm_chr4_99651684_99652782
Length = 1099
Score = 1060 bits (548), Expect = 0.0
Identities = 587/602 (97%), Gaps = 5/602 (0%)
Strand = Plus / Minus
Query: 94 cacccaatttattaaaaaggcaactaagaaaacaaacaaacaaataaaaacaagaacaga 153
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 1099 cacccattttattaaaaaggcaactaagaaaacaaataaac----aaaaacaagaacaga 1044
Query: 154 aataagaacaaacaaaataaagccaggcatggtgggccatgtcttttacggcagcacttg 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 aataagaacaaacaaaataaagccaggcatggtgggccatgtcttttacggcagcacttg 984
Query: 214 tgaggtagaagcaagcagattgctgcgagtttgaggtctgaggctagccagggcaacaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tgaggtagaagcaagcagattgctgcgagtttgaggtctgaggctagccagggcaacaca 924
Query: 274 gtgagaccctgccttggaaaaataaaatgcaaaacaaaaatagcaactgaggtccagaga 333
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 923 gtgagaccctgccttggaaaaataaaacgcaaaacaaaaatagcaactgaggtccagaga 864
Query: 334 aatcatatccataagcttcttacatatgaatgctttatctaataaactttttcataaaaa 393
||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct: 863 aatcatatccataagcttcctacatatgaatcctttatctaatatactttttcataaaaa 804
Query: 394 tattatgatccagggaaacaattctttaatttttacacttattaaagtacaggtaaattt 453
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 803 tattatgatccagggaaacaattctttaatttttgcacttattaaagtacaggtaaatta 744
Query: 454 aaaatagtgaaaaacactactggtaaaaaaaaaaa-ttgggggtttccaggtcttgaacc 512
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 743 aaaatagtgaaaaacactactggtaaaaaaaaaaaattgggggtttccaggtcttgaacc 684
Query: 513 caaagctttccatataatgaccacatagacactttattaatcagctatatctctagccct 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caaagctttccatataatgaccacatagacactttattaatcagctatatctctagccct 624
Query: 573 accccacattttaatacctcttaaaaataagtatatatggtaaaaaaaaataattgttaa 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 accccacattttaatacctcttaaaaataagtatatatggtaaaaaaaaataattgttaa 564
Query: 633 gcgtttttaatcattttgtttccagtataatctggagtacctgggggaaagaaaaataga 692
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 563 gtgtttttaatcattttgtttccagtataatctggagtgcctgggggaaagaaaaataga 504
Query: 693 ga 694
||
Sbjct: 503 ga 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space: 749232
Effective search space used: 749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_c12.g1 MSMg01no514_c12.g1 CHROMAT_FILE:
MSMg01no514_c12.g1 PHD_FILE: MSMg01no514_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:56 2005
(658 letters)
>mm_chr4_99476254_99477309
Length = 1056
Score = 1007 bits (521), Expect = 0.0
Identities = 562/579 (97%), Gaps = 11/579 (1%)
Strand = Plus / Plus
Query: 87 acacacatatatataatttaaaaatcttttttcatatggatactgtttat-aaatatttt 145
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 286 acacacatatatataatttaaaaatcttttttcatatggatactgtttattaaatatttt 345
Query: 146 ttacactgagtgaatatattttcaaatatttaataaatttagacaactatgaaagataac 205
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttacactgagtgaatatattttgaaatatttaataaatttagacaactatgaaagataac 405
Query: 206 ataaacaaaaattttcaagcgaataaagagtcaagtgatacttaagccatcagaccaaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ataaacaaaaattttcaagcgaataaagagtcaagtgatacttaagccatcagaccaaag 465
Query: 266 ggcaatgccatggaatatggaacaagaccttcaggtactgagaactcacacaatggttct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggcaatgccatggaatatggaacaagaccttcaggtactgagaactcacacaatggttct 525
Query: 326 gctgttcagcagtttcccattgtggccatacactctgtctggacttaagtctctttcctt 385
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 526 gctgttcagcagtttcccattgtggccatacactctgtctggacttgagtctctttcctt 585
Query: 386 agctaccgtgatgaataaagtggggtgggtaggtagggcagaggacagaggcaatgtctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agctaccgtgatgaataaagtggggtgggtaggtagggcagaggacagaggcaatgtctt 645
Query: 446 gtgtctcaggctaggataaatggcttcaccctctcttctagctttgtgaggagaagtgat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtgtctcaggctaggataaatggcttcaccctctcttctagctttgtgaggagaagtgat 705
Query: 506 ggaaaaggaattccaacagtgtcattcaaacaacagagacagtctcaagaaaatctccac 565
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaaaaggaattccaa--gtgtcattcaaacaacagagacagtctcaagaaaatctccac 763
Query: 566 agaacctacatgctttggttgaggcaccaagcccacattctctctct-t-----tctctc 619
||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||
Sbjct: 764 agaacctacatgctttggttgaggctccatgcccacattctctctctctctgtctctctc 823
Query: 620 tgtgtgtctctctctctct-tct-tctctgtctctctct 656
||||||||||||| ||||| ||| ||||| |||||||||
Sbjct: 824 tgtgtgtctctctgtctctgtctctctctctctctctct 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1056
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1046
Effective search space: 677808
Effective search space used: 677808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
