Query= MSMg01no514_k09.b1 MSMg01no514_k09.b1 CHROMAT_FILE:
MSMg01no514_k09.b1 PHD_FILE: MSMg01no514_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:37 2005
(648 letters)
>mm_chr4_76218118_76219167
Length = 1050
Score = 1172 bits (606), Expect = 0.0
Identities = 627/635 (98%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 16 ctattgtggatagatgactgttagatgcttaagaagcccttattcagccaaactgaacat 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctattgtggatagatgactgttagatgcttaagaagcccttattcagccaaactgaacat 275
Query: 76 agctaanacgaaatctcacatccagcatatgagtgcatgtgtattataaagcaaactcaa 135
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agctaaaatgaaatctcacatccagcatatgagtgcatgtgtattataaagcaaactcaa 335
Query: 136 ccaaaacaaattctttatcacaataaaaatgttggtgttacaaaacccaaccataaggca 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccaaaacaaattctttatcacaataaaaatgttggtgttacaaaacccaaccataaggca 395
Query: 196 gatgtgggccagcacacactcatcatggacagttcagagggagatgtctgtattttaggt 255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 396 gatgtgggccagcacacactcatcatggacagttcacagggagatgtctgtattttaggt 455
Query: 256 cagctgcggcttaccatgcaaacagctgcagcaaagaatgctgatgatatagctgctgtt 315
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 456 cagctgcggcttaccatgcaaacagctgcagaaaagaatgctgatgatatagctgctgtt 515
Query: 316 aatactgccttagactgctataaattgtgaggaaaggtaagagaattaaatctaaaaggc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatactgccttagactgctataaattgtgaggaaaggtaagagaattaaatctaaaaggc 575
Query: 376 agctgttatttatgaggcacttttgattcatgcacccacacatttaacatgatcagcagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agctgttatttatgaggcacttttgattcatgcacccacacatttaacatgatcagcagc 635
Query: 436 attgtattgcatagaactccatccctattttttttt--aatgtgggtcacaggggaggat 493
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 636 attgtattgcatagaactccatccctatttttttttttaatgtgggtcacaggggaggat 695
Query: 494 gggcagaaggttgcagcctttctgctacctgtgcatttgcaagttttatactattttact 553
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gggcagaaggttgcagccttcctgctacctgtgcatttgcaagttttatactattttact 755
Query: 554 tatcaggaaactgtgatccaatataactcagcaatcatattaaagaggaattggttttat 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tatcaggaaactgtgatccaatataactcagcaatcatattaaagaggaattggttttat 815
Query: 614 atatatatataacacacatatatacatatgtgtgt 648
||||||||| |||||||||||||||||||||||||
Sbjct: 816 atatatataaaacacacatatatacatatgtgtgt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_k09.g1 MSMg01no514_k09.g1 CHROMAT_FILE:
MSMg01no514_k09.g1 PHD_FILE: MSMg01no514_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:37 2005
(669 letters)
>mm_chr4_76397303_76398370
Length = 1068
Score = 959 bits (496), Expect = 0.0
Identities = 514/520 (98%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 149 agcttttccgtttcacagagtgtcatttattattgatctttgtgcttgtgctgctgatgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 agcttttccgtttcacagagtgtcatttattattgatctttgtgcttgtgctgctgatgt 1009
Query: 209 tctgtgcaggaagttgttccctgtgccaatatgttcaaagctattccccactttctcttc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 tctgtgcaggaagttgttccctgtgccaatatgttcaaagctattccccactttctcttc 949
Query: 269 tatcaggttcaatatattgggttttatattacggtctttgatctacttggacttgagttt 328
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 948 tatcaggttcaatatattgggttttatattaaggtctttgatctacttggacttgagttt 889
Query: 329 tgtgcagagtgataggtaaggctgattcatttctgttttcaagttgctgatctactatat 388
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 888 tgtgcagagtgataggtaaggctgattcatttctgttttcaagttgctgatatactatat 829
Query: 389 acacatctgtcatagcatgaattaacttagttagaaggtgctcagcaggtaaccatgaat 448
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aaacatctgtcatagcacgaattaacttagttagaaggtgctcagcaggtaaccatgaat 769
Query: 449 agatggtttttcctacctgttttaactaccacaaagaactcttacctctctaatctattt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 agatggtttttcctacctgttttaactaccacaaagaactcttacctctctaatctattt 709
Query: 509 ttaaaaaaatatgttttttatcaattctcaccttactttatgcatctataatgaattagt 568
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttaaaaaaatatg-tttttatcaattctcaccttactttatgcatctataatgaattagt 650
Query: 569 tcatttatatcttctaaaactattcatatagcgtgtgtgccatcattatgttttccaatt 628
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 649 tcatttatatcttctaaaactattcttatagcgtgtgtgccatcattatgttttccaatt 590
Query: 629 caaaacagatacttgtcaaattatcttttacagcacacag 668
||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 caaaacagatacttgtcaaattatcttttacagcacacag 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
