Query= MSMg01no514_l11.b1 MSMg01no514_l11.b1 CHROMAT_FILE:
MSMg01no514_l11.b1 PHD_FILE: MSMg01no514_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:43 2005
(344 letters)
>mm_chr4_33132205_33132948
Length = 744
Score = 644 bits (333), Expect = 0.0
Identities = 340/343 (99%), Gaps = 2/343 (0%)
Strand = Plus / Minus
Query: 1 atctattagagttattaatatgtatgttttatctaggctagcacaatgttagcactgact 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 473 atctattagagttattaatatgcatgttttatctaggctagcacaatgttagcactgact 414
Query: 61 ttaaaagaagtcacagcattctgaaataaaaacagaacctagaaactattttgtctaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttaaaagaagtcacagcattctgaaataaaaacagaacctagaaactattttgtctaacc 354
Query: 121 ccacataacaacaacaacaaaaatcaaaaaaactgaagtccaaaagatttgttcaaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccacataacaacaacaacaaaaatcaaaaaaactgaagtccaaaagatttgttcaaaata 294
Query: 181 atgtaattaatggggcagctgggctaaaatcctactactaagaaaaacataattttcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgtaattaatggggcagctgggctaaaatcctactactaagaaaaacataattttcaat 234
Query: 241 atttgatctatgatcttatcttaatccaaaaaagtgtgtatatgtgtgtgtgtgtgtgtg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atttgatctatgatcttatcttaatccaaaaaagtgtgtatatgtgtgtgtgtgtgtgt- 175
Query: 301 tttgtgaagtgtgatgtgtgtgtagtaagtggtgtgtgtgctc 343
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 -ttgtgaagtgtgatgtgtgtgtagtaagtggtgtgtgtgctc 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_l11.g1 MSMg01no514_l11.g1 CHROMAT_FILE:
MSMg01no514_l11.g1 PHD_FILE: MSMg01no514_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:43 2005
(630 letters)
>mm_chr4_32925287_32926316
Length = 1030
Score = 984 bits (509), Expect = 0.0
Identities = 619/703 (88%), Gaps = 73/703 (10%)
Strand = Plus / Plus
Query: 1 ttaattaagggacaaacttactcctaagaattaggctacaaaaaaaaaaaaaaaaaaaaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttaattaagggacaaagttactcctaagaattaggctacaaaaaaaaaaaaaaaaaaaaa 187
Query: 61 ----------------ggcaaggtcataaatgagacaaaggactgacctctctctcctag 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaaacttcacaaaaaaggcaaggtcataaatgagacaaaggactgacctctctctcctag 247
Query: 105 gcaactgctacttcaccttggtcctttccacaaggcacagtgcccagatggcgggtttca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcaactgctacttcaccttggtcctttccacaaggcacagtgcccagatggcgggtttca 307
Query: 165 ctcattgggttcaggctcaggctccaactgtcattgtatgtccttgtccatgacctcgta 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 ctcattgggttcaggctcaggctccaactgtcattgtatgtccttgtccatgaccttgta 367
Query: 225 tctcaacactaactgagggaccttcaccccctgatttggacttcacagtatccagaacta 284
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 368 tctcaacgctgactgagggaccttcaccccccgatttggacttcacagtatccagaacta 427
Query: 285 tgagaagcaaaggtctgctgcttgggcagccagcctacagcttcttctttcagacactgg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgagaagcaaaggtctgctgcttgggcagccagcctacagcttcttctttcagacactgg 487
Query: 345 aatggactaagataggttcacaccagatcccatgcgtgaacgcacccagaaatgcaatgt 404
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 488 aatggactaagataggttcacaccagatcccatgcgtgaacacacccagaaatgcaatgt 547
Query: 405 ccctgaactgcagacgtgtcctaatccaaggtcatcagagtcttcttgtggagaagt--- 461
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 548 ccctgaactgcagacgtgtcctagtccaacgtcatcagagtcttcttgtggagaagtaaa 607
Query: 462 ------------------------------------------------------gatttc 467
||||||
Sbjct: 608 aggctagggctgttggagccagagaggtctcagtcagatccagcaatgcctggtgatttc 667
Query: 468 gtgtaggacaattacctaggcctgctttctcgtctgtcaaacaggagtggactccacatc 527
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtgtaggacaattacctaagcctgctttctcgtctgtcaaacaggagtggactccacatc 727
Query: 528 tatacacatttgacataagaatgaagtacaatcctccatctagtgtggggttccctactg 587
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 728 tatacacacttgacataagaatgaagtacaatcctccatctagtgtgaggttccctactg 787
Query: 588 ttgctgtctgtcagcccccaagctaaggaagtccccaactgct 630
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttgctgtctgtcagcccccaagctaaggaagtccccaactgct 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
