Query= MSMg01no514_n15.b1 MSMg01no514_n15.b1 CHROMAT_FILE:
MSMg01no514_n15.b1 PHD_FILE: MSMg01no514_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:53 2005
(619 letters)
>mm_chr4_119752692_119753710
Length = 1019
Score = 1116 bits (577), Expect = 0.0
Identities = 615/643 (95%), Gaps = 24/643 (3%)
Strand = Plus / Plus
Query: 1 ttaactgaagtcccatgggcctcaaggagctggcctggctgtgccttggcccatggaatc 60
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 177 ttaactgaagtcccatgggcgtcaaggagctgtcctggctgtgccttggcccatggaatc 236
Query: 61 ctctacaatattacacttggggacaccaggccactc------------------------ 96
||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctctacaatattacacttggggacaccaggccactcagtgtgaggcctgaggtaccactc 296
Query: 97 cttgcctgctgtcagcatcctgtaccatcttccacacagctggtttttagaaatcgctct 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttgcctgctgtcagcatcctgtaccatcttccacacagctggtttttagaaatcgctct 356
Query: 157 tcttgcccctccttggcatctctacagcatcccctttaaaaagatagatggaagctccct 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcttgcccctccttggcatctctacagcatcccctttaaaaagatagatggaagctccct 416
Query: 217 ctctccaccctgggaacccatgcccctgtcaggtaccagctttagccttcttgttctccc 276
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 417 ctctccaccctgggaacccatgcccctgtcaggtaccagcttcagccttcttgttctccc 476
Query: 277 agattcacccatcctttgatagacgccatctgtgcttctgcaaggcacatgaatgagatg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agattcacccatcctttgatagacgccatctgtgcttctgcaaggcacatgaatgagatg 536
Query: 337 agctgccctgccctacgctaaaagaactcactgtgcacggagagaaaagatctgaacaaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agctgccctgccctacgctaaaagaactcactgtgcacggagagaaaagatctgaacaaa 596
Query: 397 taaggttccacctgtgagtaacaagagagagggcaccatgctcacggaatagagactccg 456
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 597 taaggttccacctgtgagtaacaagagagagggcaccatgctcacagaatagagactccg 656
Query: 457 ggaggtcaggaaagctcggtggagaatgtgaggatggaatagcgtgttcatccgagtcct 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggaggtcaggaaagctcggtggagaatgtgaggatggaatagcgtgttcatccgagtcct 716
Query: 517 ctgggaagcagaactaaaaggacagggacacacatgtgcacagccttataatacagataa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ctgggaagcagaactaaaaggacagggacacacatgtgcacagccttataatacagataa 776
Query: 577 gcaaaaacaagcttgacattggcaacgagactggtgggtacaa 619
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gcaaaaacaagcttgacattggcaacgagactggtgggtacaa 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_n15.g1 MSMg01no514_n15.g1 CHROMAT_FILE:
MSMg01no514_n15.g1 PHD_FILE: MSMg01no514_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:54 2005
(621 letters)
>mm_chr4_119909562_119910582
Length = 1021
Score = 891 bits (461), Expect = 0.0
Identities = 467/469 (99%)
Strand = Plus / Minus
Query: 153 tgccctagtgtaggactctgggggattctgtgcacagtggtataacagacacttagggag 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgccctagtgtaggactctgggggattctgtgcacagtggtataacagacacttagggag 962
Query: 213 ttctttcctaagctgtgtgtggtgatgcctgcctgtgatcccagtatttggaaagtggag 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttctttcctaagctgtgtgtggtgatgcctgcctgtgatcccagtatttggaaagtggag 902
Query: 273 gattagagattcaaggccatccttggctatatagtgagcatgaggtctgcctgggctgca 332
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 901 gattagagattcaaggccatccttggctatatagtgagcatgaggtccgcctgggctgca 842
Query: 333 tgagaccccgtcacagaaaatgaccacaggttcctgtcctaaaaagcaaactcactcaag 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgagaccccgtcacagaaaatgaccacaggttcctgtcctaaaaagcaaactcactcaag 782
Query: 393 ccacagatgccggataggtatggggcagggtgacgcttggccgactgccttcgtcttgta 452
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 781 ccacagatgccggataggtatggggcagggtgacacttggccgactgccttcgtcttgta 722
Query: 453 gctgtcttcattactgcaggcttcctgctgacctctgcacataagtgtgtggatcactca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gctgtcttcattactgcaggcttcctgctgacctctgcacataagtgtgtggatcactca 662
Query: 513 agcagcctctgttgagttaagagctggatgggtgagaggagacacaaaggcaagaacaac 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcagcctctgttgagttaagagctggatgggtgagaggagacacaaaggcaagaacaac 602
Query: 573 cgaggtgtgggacggtagtctttacagtgtcctgtttgaggcccctaaa 621
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cgaggtgtgggacggtagtctttacagtgtcctgtttgaggcccctaaa 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
