BAC Information

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BAC

Clone NameMSMg01-514P02
Chromosome4 (Build37)
Map Location 102,959,969 - 103,136,757
singlet/doubletdoublet
Overlap gene4921539E11Rik, 4930456L15Rik, Oma1
Upstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1
Downstream geneLOC665451, LOC100039940, EG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514P02.T7 (MSMg01no514_p02.b1)MSMg01-514P02.TJ (MSMg01no514_p02.g1)
ACCAG587304AG587305
length740732
length of high quality
(start - end)
477 (40 - 516)506 (72 - 577)
definitionCHROMAT_FILE: MSMg01no514_p02.b1 PHD_FILE: MSMg01no514_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:02 2005CHROMAT_FILE: MSMg01no514_p02.g1 PHD_FILE: MSMg01no514_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,136,301 - 103,136,757)(102,959,969 - 102,960,457)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAGAGGATCCGCGGAAT
TCACTGTCTTTTCGGAAGGCTGGCCTTGAAAAAGAGCCACTCATAGCCAG
AGGCACAAGAAGGTGGAAAGGGAAGCCAATGGAGGGCAACCTGGTTTGCT
GCCTCTCGCTCCTTCATCATCTGTGAGCACCGTCTACTGACCAAGTCTAT
TTGGAAGGTGGTTGGGTTGGGAACTTCAGGGTTACAAGTTTCTTAAATGG
AGAGAGTAGAGTAGAGTGGGTTTAAGAACAGACAGATAAATTACAACCAC
AGAAAGGAATATGTGAACTGATTCAAGCACTGGACGGGAGAGCCCAAGCT
TGCTGAGCCACCCCCAGTGCTTCAGATAGCCCAGTACATGATTTCCTCAG
CTCTATAGCCATCCCACCACACAACATTTATTAGAGCTTCTCCAACACTG
ACAAGCTGGAACCCCCCTCAGACCTTTACCTCTTCCTGAATCTGAATTTA
CAGGAGTTACCTGAGACTCAGGATCATGTGGCCGACATTCCTTTGACCCT
TTTTCTATACCCATCCTTGAAGCCATTTCTCCATCTCAGTAAAAACGCCC
CTCCACCCCCTCAGTAGTCATGACATAATTATGACCCTGAAAACTGTGAT
TGTTGTGGGTTAGATGATTTGTGATAAGAAGAACTCTTTTATATCTGGTT
CAAAATCAAAAGTAATAGAGTCATTTAATGGCCTATCAAC
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGGAGGGCATTTCATTTCCTGTTTCCA
GCATAGAAGTGGAGATGCGAAAATGCCTTCTAGTGGAGACAAACTATTCT
CGGTGAGAAATAAGATTAGCACAATGAAGAGAATAGGTTTCTCAAATGGG
AAAAGGCACAAATGATGCAAGAGCAGCAGATCTGCTACTTACTTATGCTA
AGGAGAAAAGCAGGCTGCTCTGGAAAAGTGGTCTCTCAACTGGTGGGTCC
CAACCCCCTTGGGGGGAGGTCACAAACCAGATAGCTGGCATATCAGATAT
TTATATTACAATTCATAACAGGAGCAAAGTGTCAGTTATGAAGTAGCAAC
AGAAATAGTTTATTTTGGGGGGGGGAGAGGAACTGTATTAAAGGGTAGCA
GCATCAGGATGGTTGAGACCCACTGATTTAGAGTGAGGTGTCCCAAGTCA
CTTATCTTTAGCATCTTCCCATCTTCAGCATCTCAATCAACATGATAAGG
TACAAAATGTCTCCTTATTTTATACAAGTGCTGGGGTATCAGGGAAAGAC
GCTCATGATGACCACACCTATTATTATCTGTCTTATCTTTTCTTAACTGC
AGTGTTTCTTTAAACTACAATCTGTAATTCCGGGGTCTAAATTACTACTC
ACCCTTTGTTTCAGATCTACCATCATTTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_p02.b1 MSMg01no514_p02.b1 CHROMAT_FILE:
MSMg01no514_p02.b1 PHD_FILE: MSMg01no514_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:02 2005
         (477 letters)



>mm_chr4_103136077_103136957
          Length = 881

 Score =  741 bits (383), Expect = 0.0
 Identities = 437/457 (95%), Gaps = 4/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 25  ggaaggctggccttgaaaaagagccactcatagccagaggcacaagaaggtggaaaggga 84
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 ggaaggctggccttgaaaaagagccactcaaagccagaggcacaagaaggtggaaaggga 622

                                                                       
Query: 85  agccaatggagggcaacctggtttgctgcctctcgctccttcatcatctgtgagcaccgt 144
            ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 cgccaagggagggcaacctggtttgcttcctctcgctccttcatcatctgtgagcaccgt 562

                                                                       
Query: 145 ctactgacc----aagtctatttggaaggtggttgggttgggaacttcagggttacaagt 200
           |||||||||    ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctactgaccaagtaagtctatttggaaggtggttgggttgagaacttcagggttacaagt 502

                                                                       
Query: 201 ttcttaaatggagagagtagagtagagtgggtttaagaacagacagataaattacaacca 260
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 501 tccttaaatggagagagtagagtagagtggggttaagaacagacagataaattacgacca 442

                                                                       
Query: 261 cagaaaggaatatgtgaactgattcaagcactggacgggagagcccaagcttgctgagcc 320
           |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cagagagaaatatgtgaactgattcaagcactggacgggagagcccaaacttgctgagcc 382

                                                                       
Query: 321 acccccagtgcttcagatagcccagtacatgatttcctcagctctatagccatcccacca 380
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 acccccactgcttcagatagcccagtacatgatttcctcagctctatagccatcccatca 322

                                                                       
Query: 381 cacaacatttattagagcttctccaacactgacaagctggaacccccctcagacctttac 440
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 321 gacaacatttattagagcttctccaacactgacaagctggaactcccctcagaccattac 262

                                                
Query: 441 ctcttcctgaatctgaatttacaggagttacctgaga 477
           |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttcctgaatctgaatttacaggagttacctgaga 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 881
Length adjustment: 10
Effective length of query: 467
Effective length of database: 871
Effective search space:   406757
Effective search space used:   406757
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no514_p02.g1 MSMg01no514_p02.g1 CHROMAT_FILE:
MSMg01no514_p02.g1 PHD_FILE: MSMg01no514_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:02 2005
         (506 letters)



>mm_chr4_102959769_102960673
          Length = 905

 Score =  801 bits (414), Expect = 0.0
 Identities = 476/506 (94%), Gaps = 17/506 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggagggcatttcatttcctgtttccagcatagaagtggagatgcgaaaatgccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 catggagggcatttcatttcctgtttccagcatagaagtggagattcgaaaatgccttct 260

                                                                       
Query: 61  agtggagacaaactattctcggtgagaaataagattagcacaatgaagagaataggtttc 120
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 261 agtggaga-aaactattctcggtgagaaataagattagcacattgaagagaataggtttt 319

                                                                       
Query: 121 tcaaatgggaaaaggcacaaatgatgcaagagcagcagatctgctacttacttatgctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaaatgggaaaaggcacaaatgatgcaagagcagcagatctgctacttacttatgctaa 379

                                                                       
Query: 181 ggagaaaagcaggctgctctggaaaagtggtctctcaactggtgggtcccaacccccttg 240
           |||||||||||||||||||||||||||||||            |||||||||||||||||
Sbjct: 380 ggagaaaagcaggctgctctggaaaagtggt------------gggtcccaacccccttg 427

                                                                       
Query: 241 gggggaggtcacaaaccagatagctggcatatcagatatttatattacaattcataacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gggggaggtcacaaaccagatagctggcatatcagatatttatattacaattcataacag 487

                                                                       
Query: 301 gagcaaagtgtcagttatgaagtagcaacagaaatagtttattttgggggggggagagga 360
           |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||
Sbjct: 488 gagcaaagtgtcagttatgaagtagcaacagaaacagtttattttttgggggggagagga 547

                                                                       
Query: 361 actgtattaaagggtagcagcatcaggatggttgagacccactgatttagagtgaggtgt 420
           |||||||||||||||| |||||||||||||||||||||    || |||||||||||||||
Sbjct: 548 actgtattaaagggtaccagcatcaggatggttgagac----tgctttagagtgaggtgt 603

                                                                       
Query: 421 cccaagtcacttatctttagcatcttcccatcttcagcatctcaatcaacatgataaggt 480
           |||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 604 cccaggtcactcatctttagcatcttcccatcgtcagcatcccaatcaacatgataaggt 663

                                     
Query: 481 acaaaatgtctccttattttatacaa 506
           |||||||||||||| |||||||||||
Sbjct: 664 acaaaatgtctcctcattttatacaa 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space:   443920
Effective search space used:   443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)