BAC Information

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BAC

Clone NameMSMg01-515N02
Chromosome4 (Build37)
Map Location 84,490,463 - 84,491,064
singlet/doubletsinglet
Overlap genenone
Upstream gene4930473A06Rik, LOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284
Downstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515N02.T7 (MSMg01no515_n02.b1)MSMg01-515N02.TJ (MSMg01no515_n02.g1)
ACCAG587964AG587965
length772765
length of high quality
(start - end)
721 (46 - 766)602 (78 - 679)
definitionCHROMAT_FILE: MSMg01no515_n02.b1 PHD_FILE: MSMg01no515_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:18 2005CHROMAT_FILE: MSMg01no515_n02.g1 PHD_FILE: MSMg01no515_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAACAAAGGAACCCTGAATGGCTGAGAAGCACTTAATGAAATAT
TCAAAGTCCTTAGTGATCAGGGAAATGCAAATTAAAGTGACCCTGAGATT
CCATCTTACACCAATCAGAATGGTTAAGATCAAAAACTCAGGTGACAGCA
TATGTTGGAGAGGATGTGGAGAAAGAGGAACACTACTCCATTACTGGTGG
GATTGCAAACTAGTACAATCACTCTAGCACTCTAGAAGTCAATTTGGAGG
TTCCTCAGAAAATTAGGAACAGATCTACTTGAAAACACAGCTATACCACT
CTCAGGCATATACACAAAAGATGCCCCACCATGCCACAGGGTCACATGTT
CCACTATGTTCATAGCAGCCTTATTTGTGATAGCCAGAAGTTGGAAACAA
CCCAGATGTCCCACAACAGAAGAAAGGATACAGAATATTTGGTTCATTTC
CATAATGGAATACTACTCAGCTCTTAAAAATGAGAGCATCCTGAGTTTTG
CAGGCAAGTGAATGGAACTAGAAAATATCATCTTGAGTGAGATAACTCAG
ACCCAAAATGACATGCATGGAATGTACTCACTAATAAGTGGATATTAGCC
AAAAAAGCACAAAATACCCAGAATACACTCCACAAAACTCAAGACTGTTA
ACAAGTCAAAGGGCCCAAGTGAAGAGACCTCAATCCCACTTGGGAGGGGG
AACAAAGCAATCACAGGGGTAG
NNCCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTCCCTTCCTGGCTGCCCTTG
GATCAAGATATAAATTTTTGGCTCTACAAGCATCATGTCTGTCACAGTTT
TCCATTGTCTGGATCCATGGTCTGGATGCTGTCATGCTTCCTGCCACAAT
GATCATGGACCAAACCTCTGAGACTGTAAGCCAGACTGAGTTAGATGCTG
TCCTCTAGAAGAGTTGCATTGGTCATGGTGTCTCTTCACGTCAATGGAAA
CTCTAACTAAGACAAGGACAAAAAAGAAAATTTAAAAATCACCTTTAACT
CCTCCACCCAGGGACAAAGTGCTTATTCAATTCCAGTTCTGTCATGAACT
AACTTGTGTCATTAACAATCATTGAAGTGGCCTACATAAGGTCCTTAGCT
TCAGTCTCCTCATCTGTAGAGGGAAGACCATATGCAGCAGCAGTGGTGGC
TGACAGAGACAGTATGGCTCTCTTTACCAGACCTTGGTATGAAGCAGAGC
TCATAGTTACTCCGTGTTTCAGAAGAGGAAGCTGTAGAAAGATTCACCAA
CTTACTATAAGGTGGTAGAAGCAAACTGGAAAACAAAATTTAAAGTAAGG
GTCATCGTTTCACGTTTGTGGCCTTCTACAATTAAGGTACATGGTTTCTT
TTTTCAAGTAGCGGCTGGCACAAGCATGGAAATGCATGTCACCATCTGGT
GACCACAGATAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_n02.g1 MSMg01no515_n02.g1 CHROMAT_FILE:
MSMg01no515_n02.g1 PHD_FILE: MSMg01no515_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:18 2005
         (602 letters)



>mm_chr4_84490263_84491264
          Length = 1002

 Score = 1164 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtcccttcctggctgcccttggatcaagatataaatttttggctctacaagcatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtcccttcctggctgcccttggatcaagatataaatttttggctctacaagcatcatg 260

                                                                       
Query: 61  tctgtcacagttttccattgtctggatccatggtctggatgctgtcatgcttcctgccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtcacagttttccattgtctggatccatggtctggatgctgtcatgcttcctgccac 320

                                                                       
Query: 121 aatgatcatggaccaaacctctgagactgtaagccagactgagttagatgctgtcctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgatcatggaccaaacctctgagactgtaagccagactgagttagatgctgtcctcta 380

                                                                       
Query: 181 gaagagttgcattggtcatggtgtctcttcacgtcaatggaaactctaactaagacaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagagttgcattggtcatggtgtctcttcacgtcaatggaaactctaactaagacaagg 440

                                                                       
Query: 241 acaaaaaagaaaatttaaaaatcacctttaactcctccacccagggacaaagtgcttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaaaagaaaatttaaaaatcacctttaactcctccacccagggacaaagtgcttatt 500

                                                                       
Query: 301 caattccagttctgtcatgaactaacttgtgtcattaacaatcattgaagtggcctacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caattccagttctgtcatgaactaacttgtgtcattaacaatcattgaagtggcctacat 560

                                                                       
Query: 361 aaggtccttagcttcagtctcctcatctgtagagggaagaccatatgcagcagcagtggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtccttagcttcagtctcctcatctgtagagggaagaccatatgcagcagcagtggt 620

                                                                       
Query: 421 ggctgacagagacagtatggctctctttaccagaccttggtatgaagcagagctcatagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctgacagagacagtatggctctctttaccagaccttggtatgaagcagagctcatagt 680

                                                                       
Query: 481 tactccgtgtttcagaagaggaagctgtagaaagattcaccaacttactataaggtggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactccgtgtttcagaagaggaagctgtagaaagattcaccaacttactataaggtggta 740

                                                                       
Query: 541 gaagcaaactggaaaacaaaatttaaagtaagggtcatcgtttcacgtttgtggccttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcaaactggaaaacaaaatttaaagtaagggtcatcgtttcacgtttgtggccttct 800

             
Query: 601 ac 602
           ||
Sbjct: 801 ac 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)