BAC Information

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BAC

Clone NameMSMg01-516C09
Chromosome4 (Build37)
Map Location 17,990,546 - 18,147,707
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516C09.T7 (MSMg01no516_c09.b1)MSMg01-516C09.TJ (MSMg01no516_c09.g1)
ACCAG588215AG588216
length746750
length of high quality
(start - end)		538 (78 - 615)563 (82 - 644)
definitionCHROMAT_FILE: MSMg01no516_c09.b1 PHD_FILE: MSMg01no516_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:45 2005CHROMAT_FILE: MSMg01no516_c09.g1 PHD_FILE: MSMg01no516_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,147,290 - 18,147,707)(17,990,546 - 17,991,106)
sequence
TTTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTTAGATATCTAGTAATTTCATAGAATATAATAGCA
AGTAGGTGGTATTTTAGTTGTGTCAGACTTTTAAACATATTTCCTTCCTA
TTGTTATAGTTGGCACTGTCCACCTGAGATCTCTTTACCCTTTGTTTCCT
TGGCATTGTCCTCAATCATGTTTAAAACTAGTGTGGTTGTCACCTGCTTT
AATGCATCCTCCCAAATCAAGTTTCCCTCTAATGACGTTATTGGCTTTTA
ATAAACTTCAAACTTTATAGTAGTTTTTGGCTCAAAGCAAAATTGAGCTC
ATATACACTCCCCATCTATGCACATGAACAGACACCCTCTCTGTCACATG
AAGCAGTAGATTAACCAGTAACCTCAGTTATATTGCTAACAGTACATTAT
TATAGAATTACCATCGAAAGCTATGGTTTACACTAGAGTTCACTTCTGCT
GCTAAAATGCTATTGATTTGGAAAACATTTTTAACATTATACCCTTTATT
GTATTCCTTATAAAGAGTTCCTCTTCTCTAAAATTCATACACATTCTGAG
TATCAATGCCTAATAATACCTACAATATTGGATCAGTATCCATCCCTATT
ACTTTCTAATTCCAGAAGGGATGAGGTCAAAGAATTACAGGCACAGGAAT
ATATATATATATATGACATCTTACTATGACATTAGAATGAATTTTG

NNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTTTCCTTCCACTAT
ATGAGTCCAGAAGACCTAGCTCAGGTCATCAGACTTATTAGCAAAAAACC
CTTACCACTGCACCATCTAATCAGTCTAGGTATGTTTCTTTTGTTGTATG
GTCTGAGTTCAACTATATTTAAGAAGAGACAATATTTTTTTAGTGGTAAT
AGAACATAAAATGTCGAGATTTAAATTTTTATCATAAGAGTACAGCCCTC
CTAAGAATTTAAGTTAGAATTTATTTTGTTAAAAAAATAAAAAATAAAAA
GATTAGTCCAAGTTTTTGCTGCATTTCTCTCATGAGCACTCAATGACTAA
ACCCATATATTTTTTTTCTGTACTATTTGAAACAACAACATAGTGGAAAA
ACGGAAATGATCATCAATAGGGAATTTAGTATTAGACAATTCAATGGAAT
ATAACATAAAATTAAGATTATATCGCATTACACATATGAGTAACATATCA
ATATTTTAAGTGTACTATTTCAGAACAAAATGTGGAGATTCACAGCACAG
TTAACCCACATACATATGAAGGCAAGCAGTGGAAATGAATACNAGAAAGG
CCAAACATAAACTATTTAGGAATAAAAGTAGATTGTTAGGAATATGAATG
TTCANCCCAGTAGCTATGTGGTTATACATCTGTGTCATAAATATGTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_c09.b1 MSMg01no516_c09.b1 CHROMAT_FILE:
MSMg01no516_c09.b1 PHD_FILE: MSMg01no516_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:45 2005
         (538 letters)



>mm_chr4_18147290_18148227
          Length = 938

 Score =  808 bits (418), Expect = 0.0
 Identities = 418/418 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatttcatagaatataatagcaagtaggtggtattttagttgtgtcagacttttaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taatttcatagaatataatagcaagtaggtggtattttagttgtgtcagacttttaaaca 359

                                                                       
Query: 61  tatttccttcctattgttatagttggcactgtccacctgagatctctttaccctttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tatttccttcctattgttatagttggcactgtccacctgagatctctttaccctttgttt 299

                                                                       
Query: 121 ccttggcattgtcctcaatcatgtttaaaactagtgtggttgtcacctgctttaatgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccttggcattgtcctcaatcatgtttaaaactagtgtggttgtcacctgctttaatgcat 239

                                                                       
Query: 181 cctcccaaatcaagtttccctctaatgacgttattggcttttaataaacttcaaacttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cctcccaaatcaagtttccctctaatgacgttattggcttttaataaacttcaaacttta 179

                                                                       
Query: 241 tagtagtttttggctcaaagcaaaattgagctcatatacactccccatctatgcacatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tagtagtttttggctcaaagcaaaattgagctcatatacactccccatctatgcacatga 119

                                                                       
Query: 301 acagacaccctctctgtcacatgaagcagtagattaaccagtaacctcagttatattgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 acagacaccctctctgtcacatgaagcagtagattaaccagtaacctcagttatattgct 59

                                                                     
Query: 361 aacagtacattattatagaattaccatcgaaagctatggtttacactagagttcactt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aacagtacattattatagaattaccatcgaaagctatggtttacactagagttcactt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_c09.g1 MSMg01no516_c09.g1 CHROMAT_FILE:
MSMg01no516_c09.g1 PHD_FILE: MSMg01no516_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:45 2005
         (563 letters)



>mm_chr4_17990346_17991308
          Length = 963

 Score = 1077 bits (557), Expect = 0.0
 Identities = 560/561 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtactttccttccactatatgagtccagaagacctagctcaggtcatcagacttattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtactttccttccactatatgagtccagaagacctagctcaggtcatcagacttattag 260

                                                                       
Query: 61  caaaaaacccttaccactgcaccatctaatcagtctaggtatgtttcttttgttgtatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaaacccttaccactgcaccatctaatcagtctaggtatgtttcttttgttgtatgg 320

                                                                       
Query: 121 tctgagttcaactatatttaagaagagacaatatttttttagtggtaatagaacataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgagttcaactatatttaagaagagacaatatttttttagtggtaatagaacataaaa 380

                                                                       
Query: 181 tgtcgagatttaaatttttatcataagagtacagccctcctaagaatttaagttagaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcgagatttaaatttttatcataagagtacagccctcctaagaatttaagttagaatt 440

                                                                       
Query: 241 tattttgttaaaaaaataaaaaataaaaagattagtccaagtttttgctgcatttctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttgttaaaaaaataaaaaataaaaagattagtccaagtttttgctgcatttctctc 500

                                                                       
Query: 301 atgagcactcaatgactaaacccatatattttttttctgtactatttgaaacaacaacat 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 atgagcactcaatgactaaacccatatattttttttctgtactacttgaaacaacaacat 560

                                                                       
Query: 361 agtggaaaaacggaaatgatcatcaatagggaatttagtattagacaattcaatggaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggaaaaacggaaatgatcatcaatagggaatttagtattagacaattcaatggaata 620

                                                                       
Query: 421 taacataaaattaagattatatcgcattacacatatgagtaacatatcaatattttaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacataaaattaagattatatcgcattacacatatgagtaacatatcaatattttaagt 680

                                                                       
Query: 481 gtactatttcagaacaaaatgtggagattcacagcacagttaacccacatacatatgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtactatttcagaacaaaatgtggagattcacagcacagttaacccacatacatatgaag 740

                                
Query: 541 gcaagcagtggaaatgaatac 561
           |||||||||||||||||||||
Sbjct: 741 gcaagcagtggaaatgaatac 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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