Query= MSMg01no516_h11.b1 MSMg01no516_h11.b1 CHROMAT_FILE:
MSMg01no516_h11.b1 PHD_FILE: MSMg01no516_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:12 2005
(602 letters)
>mm_chr4_7542988_7543989
Length = 1002
Score = 1094 bits (566), Expect = 0.0
Identities = 598/628 (95%), Gaps = 30/628 (4%)
Strand = Plus / Plus
Query: 5 gaattcaacaaagaggattctgctcattacaggttgactttccttccaagaagaacaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattcaacaaagaggattctgctcattacaggttgactttccttccaagaagaacaata 234
Query: 65 aatcatagctttagacctgtgtaatatttagcaagctacatttaaagctagcaaccatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aatcatagctttagacctgtgtaatatttagcaagctacatttaaagctagcaaccatgt 294
Query: 125 ttaatatttaatcactgaaatttgactcttaattttgaggaaataatgttccattatctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttaatatttaatcactgaaatttgactcttaattttgaggaaataatgttccattatctc 354
Query: 185 caaatatacagagagctctatatatgaccccaacaggtcaaatatgctaaatgattcaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caaatatacagagagctctatatatgaccccaacaggtcaaatatgctaaatgattcaca 414
Query: 245 aaaatttctgtgaatctatagaggtatgagtttgagaatcaaaattatttgtcagggtgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaatttctgtgaatctatagaggtatgagtttgagaatcaaaattatttgtcagggtgc 474
Query: 305 aatcccattagaaaacttggttttagtgtgtgaagattgtgataaaaaccatttgttaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatcccattagaaaacttggttttagtgtgtgaagattgtgataaaaaccatttgttaaa 534
Query: 365 ttaacatctctgccccatttattcacatacacatagacacacaaacacactcagagagag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttaacatctctgccccatttattcacatacacatagacacacaaacacactcagagagag 594
Query: 425 agagagagagagagagagagagagagagagagagagagagagagagagag---------- 474
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 654
Query: 475 --------------------gaagagaggaagagagagaaagagaaggaagaaaaaaaac 514
||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agagagagagaggaagagaggaagagaggaagagagagaaagagaaggaagaaaaaaaac 714
Query: 515 ttggttttagtgtgtgaagattgtgattaaaaacatttgttaaattaacatctctgcccc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttggttttagtgtgtgaagattgtgattaaaaacatttgttaaattaacatctctgcccc 774
Query: 575 atttattcacatacacatagacacacaa 602
||||||||||||||||||||||||||||
Sbjct: 775 atttattcacatacacatagacacacaa 802
Score = 128 bits (66), Expect = 1e-33
Identities = 72/74 (97%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 316 aaaacttggttttagtgtgtgaagattgtgat-aaaaaccatttgttaaattaacatctc 374
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 930 aaaacttggttttagtgtgtgaagattgtgattaaaaac-atttgttaaattaacatctc 988
Query: 375 tgccccatttattc 388
||||||||||||||
Sbjct: 989 tgccccatttattc 1002
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 231
Number of extensions: 84
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_h11.g1 MSMg01no516_h11.g1 CHROMAT_FILE:
MSMg01no516_h11.g1 PHD_FILE: MSMg01no516_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:12 2005
(644 letters)
>mm_chr4_7735154_7736203
Length = 1050
Score = 942 bits (487), Expect = 0.0
Identities = 515/527 (97%), Gaps = 6/527 (1%)
Strand = Plus / Minus
Query: 1 agtacaaactgatgtgaaaataagagattttatgttcatctaatgacagtaagatatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agtacaaactgatgtgaaaataagagattttatgttcatctaatgacagtaagatatgaa 668
Query: 61 tggagcaaagatttatgtgaaaagattcatggagcgttgaaagggccaacttacatactt 120
|| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 667 tgaagcaaagatttatgtgaaaagattcatggagctttgaaagggccaagttacatactt 608
Query: 121 tgttattcaccaacaggtaatttatc----aaaaaaaaaaaaaac--ccaaaaacaaaca 174
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 607 tgttattcaccaacaggtaatttatcaaaaaaaaaaaaaaaaaacaaccaaaaacaaaca 548
Query: 175 tttgaacaattccaatagatttgcatggctcagactagtaacaccagtttagaagaataa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tttgaacaattccaatagatttgcatggctcagactagtaacaccagtttagaagaataa 488
Query: 235 atctttttctcaagaagagaatttgtgtttacttcatgtgagacctaagtttaaaaacta 294
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 487 atctttttctcaagaagagaatttgtgtttacttcatgtgagacctaagttaaaaaacta 428
Query: 295 tataatcatatttgactttatggagaaaatttttgtaatttacttccattcctgttacat 354
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgtaatcatatttgactttatggagaaaatttttgtaatttacttccattcctgttacat 368
Query: 355 aagtttctatagaaatagtgaatgtcggcccttggtctgtaaagcaccctactccctgaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagtttctatagaaatagtgaatgtcggcccttggtctgtaaagcaccctactccctgaa 308
Query: 415 aattcttagaaacggattgctgtttcagatggatgctgttcaggtatagagattattatt 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 aattcttagaaacggattgctgtttcagatgaatgctgttcaggtatagagattattatt 248
Query: 475 tttatatcccaatattttattctccaatcttaatgaaattctttgtt 521
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttatatcccaatattttattctccaatcttaatgaaattctttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1050
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1040
Effective search space: 659360
Effective search space used: 659360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
