NNNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCTATGGAAATTCCAACAAAGTGTGTAGTAAATGTTTTCATT
TATTAAATAAAACTAAATTATTCAACATTTATGTGACACACACACACACA
CACACACACACACATATATCATGTCAATTTTCATGTATTGACAGTTTAAA
AGCGTAAAAGATATTCTGTGAACAATAGCGAACATTTGGTCTTTGTATTG
AGTAAAGACTATGAGCTTCTTATGCACTACTGATGATTCCATGACTATAC
AAAGCAGCTTAATACAAATGATCCTAACTGGGGAATGTATTTAAAATGTG
GATAACGAAGGGTGAAAGGAGTAGAAGGGTTGTAATTGTAAGTATTTCAG
TAATTTTTCACAGAATAAAGAACAATGGATAGAGAAAGAAACTGTAAAGT
CCATCTCACATGTCTTGTCTCCAGCATGGGAAACCTGGAACACTTAGAGT
ACAGGGCCCCATGAGGGAGTGAGTTTTGCTACAAGTGTTCACTCAAACCC
AAGGCTGATCTCAGTAGAATGCTTTTCAGTAATTTCTCATTTTCCACACA
TTTTTTAAAAATGGACTAATTAGAAAATATTTTTAATGAAAAATATCTTA
AGATTCATACTACCTACAGTTTCATCTTTTTTGTTTGGTTGTTTGGGNTT
TTTGTTTTGTTTTGTTTTAGAGACAGGATTTCTCTGTATAGCCCTGGCTG
TCCTGGGACTCANCTTTGTAGACAA

NTTTCCGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGATTAAGATAATCTGAC
CCTGGGCTTTGTTCAGTTTTGAATAATTTTAATTTTTCAGCATTAAAGAG
AATTTTAAAGACTTCTTTTATTTTCTTGGGGGTTATATTCCTACTTAAAT
TATTTATATGTTGTTAATTTAACTTTAGCAAATGGTATACCCTGTGGAAA
TTATCTACTTCCTAATTTAGTAGATTACAGATTTTTAAACCATGTCTTCA
TGATTCTCTGGATTTTTATCAATTTCTGTTGTTTTTTTTCTCCTTTTTCA
TTTCCAATTTTTAAAATTATGATATTATTTCTGTACCTTTTGGGTAATTT
GGGTAGGGTTTTATAAATCATTTTTTATTTTATTAAAGAATATTTGTTTC
AATGATTCTTTATATTATGTGTTGTTTGTTGTAGTTGCTTCTATGTTATT
GATTTCAGCTTTGACTTTGATTATTTCTTGCTTTCTACTCCGTTTGGATG
TGATTTTTCCCTTTTGTTGTAGAACTTTCAGGTATGATGTTAAGGTGCTA
GTATAAGTATCCCCATTTAATAAAACCACTTAGTTGCTGCTATGAAGNTA
CCATTGAGAACAGCTTTCCCTATGNTCCATAAGTTTTCATTCAATTCTAG
GAAGTTTCATTTTTTTCTTTCTTACTTTTTGGCTTTACCCATTTACTCTT
CCAGCGAGAGCAGTTCTGCT

Query= MSMg01no516_i10.b1 MSMg01no516_i10.b1 CHROMAT_FILE:
MSMg01no516_i10.b1 PHD_FILE: MSMg01no516_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:17 2005
         (572 letters)



>mm_chr4_23724379_23725350
          Length = 972

 Score =  969 bits (501), Expect = 0.0
 Identities = 544/567 (95%), Gaps = 14/567 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctatggaaattccaacaaagtgtgtagtaaatgttttcatttattaaataaaact 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaattctatggaaattagaacaaagtgtgtagtaaatgttttcatttattaaataaaact 279

                                                                       
Query: 66  aaattattcaacatttatgtgacacacacacacacacacacacacacacatatatcatgt 125
           ||||||||||||||||||||||||||||||||||||              ||||||||||
Sbjct: 280 aaattattcaacatttatgtgacacacacacacaca--------------tatatcatgt 325

                                                                       
Query: 126 caattttcatgtattgacagtttaaaagcgtaaaagatattctgtgaacaatagcgaaca 185
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 326 caactttcatgtattgacagtttaaaagcgtaaaagatattccgtgaacaatagcgaaca 385

                                                                       
Query: 186 tttggtctttgtattgagtaaagactatgagcttcttatgcactactgatgattccatga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttggtctttgtattgagtaaagactatgagcttcttatgcactactgatgattccatga 445

                                                                       
Query: 246 ctatacaaagcagcttaatacaaatgatcctaactggggaatgtatttaaaatgtggata 305
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 ctatacaaagcagcttaatacaaatgatcctaattggggaatgtatttaaaatgtggata 505

                                                                       
Query: 306 acgaagggtgaaaggagtagaagggttgtaattgtaagtatttcagtaatttttcacaga 365
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaagggtgaaaggagtagaagggttgtaattgtaagtatttcagtaatttttcacaga 565

                                                                       
Query: 366 ataaagaacaatggatagagaaagaaactgtaaagtccatctcacatgtcttgtctccag 425
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ataaagaacaatggatagaggaagaaactgtaaagtccatctcacatgtcttgtctccag 625

                                                                       
Query: 426 catgggaaacctggaacacttagagtacagggccccatgagggagtgagttttgctacaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catgggaaacctggaacacttagagtacagggccccatgagggagtgagttttgctacaa 685

                                                                       
Query: 486 gtgttcactcaaacccaaggctgatctcagtagaatgcttttcagtaatttctcattttc 545
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 686 gtgttcactcaaacccaaggctcatctcagtaggatgcttttcagtaatttctcattttc 745

                                      
Query: 546 cacacattttttaaaaatggactaatt 572
           |||||||||||||||||||||||||||
Sbjct: 746 cacacattttttaaaaatggactaatt 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)