BAC Information

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BAC

Clone NameMSMg01-516M17
Chromosome4 (Build37)
Map Location 56,430,487 - 56,518,002
singlet/doubletdoublet
Overlap genenone
Upstream geneKlf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516M17.T7 (MSMg01no516_m17.b1)MSMg01-516M17.TJ (MSMg01no516_m17.g1)
ACCAG588705AG588706
length773773
length of high quality
(start - end)		590 (52 - 641)602 (81 - 682)
definitionCHROMAT_FILE: MSMg01no516_m17.b1 PHD_FILE: MSMg01no516_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:39 2005CHROMAT_FILE: MSMg01no516_m17.g1 PHD_FILE: MSMg01no516_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,430,487 - 56,431,072)(56,517,401 - 56,518,002)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATAACATTACTGAGATTTTAGTGTACAGACACATCCAC
CTTCAGTGTTCCATTTTCACATTTTTTTCACTTTCTTTGTAAGGATTTTG
GAGGTACAGAGCCATAAAAAGATGTACTAGAAGCCACATGGTGAAGAAGA
CATTTCTACTACTGCATCAAGTGTCATAACAGCAACTGAACCCAACTTTC
TCAGAAGGACACAGGAAAGAGAAGGGGCTCAACATGGTTACAAAGAAGGA
AAACATCTTCATCAGAACTCTAGCCTTTGGTTGAAGAGACCTCAGGCAAG
GCTTTGGAACTGTGATGGCAAAGGAATTTTCGTTGTAAAATTGTACCTTT
AAACCTCATTTTGAAATGTCATTTGGGTGCACAGTATTTAGCACAAAAAC
AAGTAATTGTAGTCTTAATATTAGTTATATATTCAATTGTACAGTTGGGA
GGCACTATAACTTGTCAGCTCTTTAAAAACTGGAGTAGGAGCTGGAGGAA
TGGATCCACAGCCTGTCCTCGGTGGGAGAGGATGCACCTAATCCTATAGA
GACTTGATGCCCCAGAGAAGGGGGGATGCTGGCAGGAGGGGTGAGTGTGG
GGAAAGGTTGGGNNNANNNNNTNNNNNAGGNNNNNNNNNNNNNNNNNNNN
NNGNNNNNNNNNNNNGNNNNGGNNGNNNNNNNNNNNGGGGGGNNNNTTNG
GGGGGGGGGGNNNNNNNGGNTTT

NNNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTATTGGGAACATAGAA
GATCATTGCAGCAATGGGTGCTCAGAGTAATGCCAGCATGCTGGAAATCG
CAGCAGTCTATGGAAAGAGCGTTCTGTACTTGGCATAAAGGAGAGATGTT
CATTCTAAGGGAGTGATGGCAAGCAGGTTAGAAAAACCTTAACAATCTGG
TATGGGAGGGTAGGAAAATGTCAGAAGAAATCCAGACCTGAAAGCATGAC
AATACAACACCTTGGAAATAGGCTGGCCTATGGGAGCAGAAACCAAGAAC
AGGGAAAGGAAGGGAGGAGCTGGAATGTGAGAAGCCTCAGAGGTCAGGCT
GGTCCCAAACAAGACTAAAAATCAGGTTTAGAGTAACAAGTGTCTCAGTT
ACTGGAAACTTCAAGCCCTGAAAACTTGTCAGTGATCATAGGCAGTAGGG
AGAGTTGATGAGGGATCTATTTTCAGAAAATCTTCCTGACAACTGAGTGG
AGAATAAATGAGAAGGGCTAAACTTAGGTTTCAGCCCCTCCCCAAAGACT
CATCAATAGATGTAGGTATCCTTTATTAGACATCTATTTCTCTAGCTCAG
TGGTGTGCAAGAATCAGTTGAGGGATAGTTTTAAAATACCAAATGCCCAG
GTCAACCCTCACAGTGTCAGAGACTGTCTGAGATTTGAATTATCTTGTAT
TCTTAGGCACGTTCCAGGTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_m17.b1 MSMg01no516_m17.b1 CHROMAT_FILE:
MSMg01no516_m17.b1 PHD_FILE: MSMg01no516_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:39 2005
         (590 letters)



>mm_chr4_56430283_56431272
          Length = 990

 Score = 1048 bits (542), Expect = 0.0
 Identities = 575/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataacattactgagattttagtgtacagacacatccaccttcagtgttccatt 64
           |||||||||||||  | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcaataacaagaatgagattttagtgtacagacgcatccaccttcagtgttccatt 264

                                                                       
Query: 65  ttcacatttttttcactttctttgtaaggattttggaggtacagagccataaaaagatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcacatttttttcactttctttgtaaggattttggaggtacagagccataaaaagatgt 324

                                                                       
Query: 125 actagaagccacatggtgaagaagacatttctactactgcatcaagtgtcataacagcaa 184
           || ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 325 accagaagccacatggtgaagaagacatttctactactgcatcaagtgccattacagcaa 384

                                                                       
Query: 185 ctgaacccaactttctcagaaggacacaggaaagagaaggggctcaacatggttacaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaacccaactttctcagaaggacacaggaaagagaaggggctcaacatggttacaaag 444

                                                                       
Query: 245 aaggaaaacatcttcatcagaactctagcctttggttgaagagacctcaggcaaggcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaaaacatcttcatcagaactctagcctttggttgaagagacctcaggcaaggcttt 504

                                                                       
Query: 305 ggaactgtgatggcaaaggaattttcgttgtaaaattgtacctttaaacctcattttgaa 364
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 ggaactgtggtggcaaaggaattttcattgtaaaattgtacctttaaacctcattttgaa 564

                                                                       
Query: 365 atgtcatttgggtgcacagtatttagcacaaaaacaagtaattgtagtcttaatattagt 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtcatttggatgcacagtatttagcacaaaaacaagtaattgtagtcttaatattagt 624

                                                                       
Query: 425 tatatattcaattgtacagttgggaggcactataacttgtcagctctttaaaaactggag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatatattcaattgtacagttgggaggcactataacttgtcagctctttaaaaactggag 684

                                                                       
Query: 485 taggagctggaggaatggatccacagcctgtcctcggtgggagaggatgcacctaatcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taggagctggaggaatggatccacagcctgtcctcggtgggagaggatgcacctaatcct 744

                                                         
Query: 545 atagagacttgatgccccagagaaggggggatgctggcaggagggg 590
           |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 atagagacttgatgccccagagaaggggggatgctggcgggagggg 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_m17.g1 MSMg01no516_m17.g1 CHROMAT_FILE:
MSMg01no516_m17.g1 PHD_FILE: MSMg01no516_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:40 2005
         (602 letters)



>mm_chr4_56517201_56518202
          Length = 1002

 Score = 1141 bits (590), Expect = 0.0
 Identities = 599/602 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttattgggaacatagaagatcattgcagcaatgggtgctcagagtaatgccagcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgtttattgggaacatagaagatcattgcagcaatgggtgctcagagtaatgccagcatg 743

                                                                       
Query: 61  ctggaaatcgcagcagtctatggaaagagcgttctgtacttggcataaaggagagatgtt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctggaaatcgcaacagtctatggaaagagcgttctgtacttggcataaaggagagatgtt 683

                                                                       
Query: 121 cattctaagggagtgatggcaagcaggttagaaaaaccttaacaatctggtatgggaggg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cattttaagggagtgatggcaagcaggttagaaaaaccttaacaatctggtatgggaggg 623

                                                                       
Query: 181 taggaaaatgtcagaagaaatccagacctgaaagcatgacaatacaacaccttggaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taggaaaatgtcagaagaaatccagacctgaaagcatgacaatacaacaccttggaaata 563

                                                                       
Query: 241 ggctggcctatgggagcagaaaccaagaacagggaaaggaagggaggagctggaatgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 ggctggcctatgggagcagaaaccaagaacagggaaaggaagggaggagctggaacgtga 503

                                                                       
Query: 301 gaagcctcagaggtcaggctggtcccaaacaagactaaaaatcaggtttagagtaacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaagcctcagaggtcaggctggtcccaaacaagactaaaaatcaggtttagagtaacaag 443

                                                                       
Query: 361 tgtctcagttactggaaacttcaagccctgaaaacttgtcagtgatcataggcagtaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtctcagttactggaaacttcaagccctgaaaacttgtcagtgatcataggcagtaggg 383

                                                                       
Query: 421 agagttgatgagggatctattttcagaaaatcttcctgacaactgagtggagaataaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agagttgatgagggatctattttcagaaaatcttcctgacaactgagtggagaataaatg 323

                                                                       
Query: 481 agaagggctaaacttaggtttcagcccctccccaaagactcatcaatagatgtaggtatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaagggctaaacttaggtttcagcccctccccaaagactcatcaatagatgtaggtatc 263

                                                                       
Query: 541 ctttattagacatctatttctctagctcagtggtgtgcaagaatcagttgagggatagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctttattagacatctatttctctagctcagtggtgtgcaagaatcagttgagggatagtt 203

             
Query: 601 tt 602
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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