BAC Information

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BAC

Clone NameMSMg01-517G22
Chromosome4 (Build37)
Map Location 67,639,845 - 67,640,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517G22.T7 (MSMg01no517_g22.b1)MSMg01-517G22.TJ (MSMg01no517_g22.g1)
ACCAG589185AG589186
length1,422786
length of high quality
(start - end)		---599 (63 - 661)
definitionCHROMAT_FILE: MSMg01no517_g22.b1 PHD_FILE: MSMg01no517_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:31 2005CHROMAT_FILE: MSMg01no517_g22.g1 PHD_FILE: MSMg01no517_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTGCCACGCCCTCCACACAACCCCAACCTATATTGTCTTCTCCACAGA
AACCAGCNGGGCTATGTCTGCGTCGTGACTTTCTCTCCTATCAATAGAAA
GAGNCTAGTTTATACTACTACATTCGCGTTAGTGCCACGTGGGTTGTAGA
CGCTTCCTAGGGCGAGTTTTTATCATTTATCCCGGCGCGCAATGCAATAC
CCAGTGTACTACCAACATGTNTTCACTTATGGAAATTAAAGTGTCCGTCA
GGCACGTTGATGACGATCTATATCCCTACGCGTACGATTGCAGTGACCAT
ACCTTGATGTAATGTACAATGAGACCATGGTGTCGCACCGGAACAAGTTG
TAACGTGAATTACATGCTGTGTTGCTTTAATTTATATATGTAGTCAGTGT
CGTGTGCCTATTACTAGCTGACGTGCGCGGATACACTGCAATAGAGGCGA
GATAGCGTGTTTAAGATTGTACGACGCTTCGACTATATTTCCACACCACA
CTCTTTATATTGAACAGCACGCCCTATATATGTTTCGCGTCTTATCTCCG
TCGCGCTTTGCTAGTAATGTTATAGCGCGAGCTCATCACACCTAAACAAA
TATTCTCGCCCGTAGCGCGCACTGTTGATATATATTAATTATTCTCTACC
CCACATATTACCTCGCCATTTTAAGTCAGTGCGTCCTCCCCCCGTTCCAC
CACACACTCTTATATATGCATCTAAATACGCGAACTATTATACGCTGATC
GGATGATCATATAAATGTACATACTCTCTCTCTACNTACCTGTACTAATT
TATTGCGCGCTCCTTATTATTATCACTACATGATCGAACAGTCTTCTCAA
TTATTACTCACACCACTATGACTGAGCATCTAGAACATAACTGATTAGAC
CGTTGTTACGCGTACCTTTTACTTATACGCCTCTCGTCCTCATGCACCTA
GATGTACTATACCACTCGCCGCCATATTATCTTACGTATATATCACCTAT
TATATTGTGTTACACCCTATATATACCACACCACATCACTCGANNTCCAG
AGTAGTGAGTGATGATCTCCCGCTGTACCCCACTCTGTCACTCGTATATA
TTAATACANACGACTACCGACGTCGATAATTACTTATATATAAGCAGCCG
CAACTATAACCGCCTCTTTCCTCATCTCACCGTCCGCTTTACATACACTA
TCTTTTGTCATCTNCTAAAATTATCATTCTCCATTCTTTACCAACACACG
CTATACTACGTTCGCGCAACACTCGCTGATCATGTCTCCACATATNATTA
GTCGCACAATAAGCNACACGACTCGCTGTCGNCACAGTANTGTGANTGTG
GTGTTAGCTACGCATATACGTCCGCTATCGTNCTAGTATTATTACACGNC
TCAGCCAGCTATACAATCGCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATCCAGATTTGTTAATTTATGACACTAGCAATACGTT
TATCTCACCATTCTTACCATTAGACCCTGAATTTCAGTTGACCATTACCT
TTCTGTTGTAAATATTTACAAAATTACTTGGAAATTTAGGCTGGATCTCA
AGTCCTGGGATTGTGATTAGAAAACATTCAGTCAGGGCATTAGCTTGAGA
CAGACATAAATACAGAAGAAACTGGTATATCTTTTCTCAGCTTCAAAAAT
ATCTTCTTGAATGAAACTTATATCATCATGACATTTTCTACAGGTTTGGC
ACAAGCAAGATTGATGACATGAAATAAAGAAGAAAGGCATTTTGACCCCT
TCATTTTCTCAGTCACTAGCAATATTTTTGACAAACATTTTTGTCATTAT
CACCTTGCAGAGAAAACAGACGCTGTATTTTATATATACTTTTTCTATAT
CAAAATTATTGCCTTCTGTGAATAATAAAATTAATATAGTCTCTTCTTAA
ATAAAGCCTGTAGACAACCTTCCCTTACCAATTAATTAAACATTTGAGTC
AATCTAGTTCTAGGCTCATTCAAGGTTTTATAAACCCTGATGCTTTGCCA
TTTTCCCCCTGGATTCTCACTATTTAAAGGAGAAATATTTTCTAATATGA
GCTTTTGTGGATTTAACCCATCATCCTTGTTTCAAGACTATAATGCCCCA
GAAAGGAGAGTGTTTCAAACAAATCAGAACTGNAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_g22.g1 MSMg01no517_g22.g1 CHROMAT_FILE:
MSMg01no517_g22.g1 PHD_FILE: MSMg01no517_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:31 2005
         (599 letters)



>mm_chr4_67639645_67640643
          Length = 999

 Score = 1129 bits (584), Expect = 0.0
 Identities = 593/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccagatttgttaatttatgacactagcaatacgtttatctcaccattcttaccatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccagatttgttaatttatgacactagcaatacgtttatctcaccattcttaccatta 260

                                                                       
Query: 61  gaccctgaatttcagttgaccattacctttctgttgtaaatatttacaaaattacttgga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccttgaatttcagttgaccattacctttctgttgtaaatatttacaaaattacttgga 320

                                                                       
Query: 121 aatttaggctggatctcaagtcctgggattgtgattagaaaacattcagtcagggcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttaggctggatctcaagtcctgggattgtgattagaaaacattcagtcagggcatta 380

                                                                       
Query: 181 gcttgagacagacataaatacagaagaaactggtatatcttttctcagcttcaaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgagacagacataaatacagaagaaactggtatatcttttctcagcttcaaaaatat 440

                                                                       
Query: 241 cttcttgaatgaaacttatatcatcatgacattttctacaggtttggcacaagcaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcttgaatgaaacttatatcatcatgacattttctacaggtttggcacaagcaagatt 500

                                                                       
Query: 301 gatgacatgaaataaagaagaaaggcattttgaccccttcattttctcagtcactagcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgacatgaaataaagaagaaaggcattttgaccccttcattttctcagtcactagcaa 560

                                                                       
Query: 361 tatttttgacaaacatttttgtcattatcaccttgcagagaaaacagacgctgtatttta 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tatttttgacaaacatttttgtcattatcaccttgcagagaagacagacgctgtatttta 620

                                                                       
Query: 421 tatatactttttctatatcaaaattattgccttctgtgaataataaaattaatatagtct 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatactttttctatatcacaattattgccttctgtgaataataaaattaatatagtct 680

                                                                       
Query: 481 cttcttaaataaagcctgtagacaaccttcccttaccaattaattaaacatttgagtcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcttaaataaagcctgtagacaaccttcccttaccaattaattaaacatttgagtcaa 740

                                                                   
Query: 541 tctagttctaggctcattcaaggttttataaaccctgatgctttgccattttcccc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctagttctaggctcattcaaggttttataaaccctgatgctttgccattttcccc 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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