XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
CGACAGATGGCATGCCATGTGAGCAGGAAATACTTTGAAAGTTGTAATTA
ATACTTGTGATGTGAATGCAGTTTTGTCTGAAATGTGCCCTTTTCTCTCT
ACTGTTCCCATTTCTAAGACTGTGCATTGAGTACCTGCTATTACCAGATA
AGGGAAAATGTCCCTTCGGATTGTATCTCCAGGTGGCAGTCCATAGGTGT
CCTTGGGCAGTATGTACCCAAAAGTTGCTCTTCTGAATGACAGTTCTGAA
CACCCAGGTCCTTTTCCTCAGAACAGCATCCCAAAGTCTGTAGAGTACAG
CTCTCACCATACTTGAGACCCTTCAGGATTTGGTTCTACCGTGGCCTTTG
CCTTCCCTTTCTCTGCTGGTCCTGCCTTCCCATCTCTGCCCTCCTTTGTT
GCACACTTGGGTCTCAGACACATATATTTGATGGCTTTTCCAGCCTTCCC
CAAACCTTGTCACTCTTCTTCCTAGTTAGGAATGTGCTACCCCGTTCTCG
GTAGGCAAGATCTCAGGCATTCCTTGATTTTCTTTCTTTTTTTTTTTTTT
TTTGAGCAGAGTTTACCCCCCATGCCACTTTGGGTAAATCTTTCTAATGA
TAAAAAATAACATAAAGTTTTTAAAAATGGGTTTGCCTTGTACCATTGTA
CCATCTTATTTAAATTTGGAGTTTCTTTTATAATACAACTTTACGAATTT
ATTGGAAAGCATATAAGTAN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGAAGAAATGAGTTGATGGTTCTGCCCAGATCT
GACTTTGGTGGACTTCACTGGAAGTTCAGGGGTCAGTTCTTGGACAAATA
AGCTGGCACTTGCTCATAGAGAACTACACTGCTTTGGGCTGCAGGATGAG
GGAAGGGAGTGAGGAAGTGTGTGGGAAGCCGCCCTCACATTTGCCATTAT
AAGATGGCGCTGACAGCTGTGTTCTAAGTAGTAAATAATCTGCACACGTG
CAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCCCGTGATGACAACTG
GGCCGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAGGAT
AATTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTCTCTCTCGCTTTCTT
GTTCTTGTTCTTTCTCTTGCTCTGGCTCTTGCTTCTTGCTCCTGAAGATG
TAAGCAATAAAGCTCTTGCTTTTGCTCTCTTGCTCTGGCTCTTGCTCTCT
TGAGCTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTGCT
CTCTTGCTCTCTGGCTCCTAAAGATGTAAGCAATAAAGCTTTGCCGCAGA
AGATTCCGGTTTGCTGTGTTCTTCCTGGCCGGTCGCGAGAAAGCGTGTAA
TAAAGTGGGTTTATCGGTGAGTATGGCAGAACAACTAGAAAACCTTGTTG
CTGCCACACTAT

Query= MSMg01no517_h09.b1 MSMg01no517_h09.b1 CHROMAT_FILE:
MSMg01no517_h09.b1 PHD_FILE: MSMg01no517_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:33 2005
         (585 letters)



>mm_chr4_104844030_104845014
          Length = 985

 Score = 1100 bits (569), Expect = 0.0
 Identities = 579/583 (99%), Gaps = 2/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcgacagatggcatgccatgtgagcaggaaatactttgaaagttgtaattaa 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcaacagatggcatgccatgtgagcaggaaatactttgaaagttgtaattaa 264

                                                                       
Query: 65  tacttgtgatgtgaatgcagttttgtctgaaatgtgcccttttctctctactgttcccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacttgtgatgtgaatgcagttttgtctgaaatgtgcccttttctctctactgttcccat 324

                                                                       
Query: 125 ttctaagactgtgcattgagtacctgctattaccagataagggaaaatgtcccttcggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctaagactgtgcattgagtacctgctattaccagataagggaaaatgtcccttcggat 384

                                                                       
Query: 185 tgtatctccaggtggcagtccataggtgtccttgggcagtatgtacccaaaagttgctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtatctccaggtggcagtccataggtgtccttgggcagtatgtacccaaaagttgctct 444

                                                                       
Query: 245 tctgaatgacagttctgaacacccaggtccttttcctcagaacagcatcccaaagtctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgaatgacagttctgaacacccaggtccttttcctcagaacagcatcccaaagtctgt 504

                                                                       
Query: 305 agagtacagctctcaccatacttgagacccttcaggatttggttctaccgtggcctttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagtacagctctcaccatacttgagacccttcaggatttggttctaccgtggcctttgc 564

                                                                       
Query: 365 cttccctttctctgctggtcctgccttcccatctctgccctcctttgttgcacacttggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttccctttctctgctggtcctgccttcccatctctgccctcctttgttgcacacttggg 624

                                                                       
Query: 425 tctcagacacatatatttgatggcttttccagccttccccaaaccttgtcactcttcttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcagacacatatatttgatggcttttccagccttccccaaaccttgtcactcttcttc 684

                                                                       
Query: 485 ctagttaggaatgtgctaccccgttctcggtaggcaagatctcaggcattccttgatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctagttaggaatgtgctaccccgttctcggtaggcaagatctcaggcattccttgatttt 744

                                                      
Query: 545 ctttcttttttttttttttttt--gagcagagtttacccccca 585
           |||| |||||||||||||||||  |||||||||||||||||||
Sbjct: 745 ctttttttttttttttttttttttgagcagagtttacccccca 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_h09.g1 MSMg01no517_h09.g1 CHROMAT_FILE:
MSMg01no517_h09.g1 PHD_FILE: MSMg01no517_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:33 2005
         (551 letters)



>mm_chr4_105028121_105029072
          Length = 952

 Score =  288 bits (149), Expect = 6e-82
 Identities = 152/153 (99%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaag-aaatgagttgatggttctgcccagatctgactttggtggacttcactggaagtt 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgaagaaaatgagttgatggttctgcccagatctgactttggtggacttcactggaagtt 294

                                                                       
Query: 60  caggggtcagttcttggacaaataagctggcacttgctcatagagaactacactgctttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 caggggtcagttcttggacaaataagctggcacttgctcatagagaactacactgctttg 234

                                            
Query: 120 ggctgcaggatgagggaagggagtgaggaagtg 152
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ggctgcaggatgagggaagggagtgaggaagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space:   509622
Effective search space used:   509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)