TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGAGCCCCATTATTTAATGGGATTATTTGATTTTCT
GGAGTTCACCTTCTTGAATTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCTAATCNTGGNTTNTTTTGGG
GGNNGGGGGTNNNTTTTTTGGGGGTNNGGTCCTTTTTTTGTCTTTTACCT
GGATCGGTGGTCTTTTTTGGCTCTTTGGCAAGAAAGCCTTTTTGGCAGTT
TTTTAATAAAGGGGCCCCCATTTTGGTCAATTCCCTCATTCTTACAGGGA
CAGGCCTTTGTTGGTCCATTTCGGGAATTTTTCCCCGGGAACCCAAAATT
CTTGGAAGGGTTTTTCCCTAAATTTTCCCCCTCAAAAAGAGTTCACGCAT
TCTCGGGGGGTTTTTGGGGGGGGGTTCCCTGGGGCCCCCCTTTAAAATTT
GGGCCCCTTTGGCCCCCCGGGGGAGAAAGGGAAGGGGGGGAAAATTTCTC
CCATCTTTTTTTTTCAGGGGAGAAACCACCCCACCGGGGGGGGCGGGCGC
CCAAAATATTTGTGGGAGAAAAAAGGGGGGGGTTTTTTTTTTTTCCCCGG
GGGGGGGGGGTTTTTGTGTTCCCCTCCTTTGGGTGAAAAAAAAAAAGGGG
GGGCCCCCCAAGGGGGGGGGGGGGGGGGGGTGTTTTTTTTTTGGGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAGCCACTATGCCTTAAGATCTCTATGCCC
AGATCCAGGTCAGAAACTTCTATCTTCCAGCCTCCAGATTAGGGTCACAG
GTCAGCCTTCCAATTCTGGATTGTAGTTCATTCCAGATATGATCAAGTTG
ACAACCAGGAACAGTCACTATAGGTGGTAACATCAAGTGACTTTTAATAT
GTTTCTGAAATGTTTGAACTTCTTCCTTTTTTTTTTTTTTTGAGAAATTT
CTGTTCTATCCCAAAGCACAAATTTCATTTATATTAAGCTCCCTGCTGGC
TAATTTCTGAGAATGTTATGGAAGGAAAGTTAAAAGTAATGTAAGAGCTA
GAAGGTAGGAATTAGTGCTGTAAAGTGCTGTCTTCTGCACGAGAGGCTAG
TCATGCTCTCATAAACTCTCAGAAGCTGTGGCCACTTTCACAAGATCAAG
ACAGTCAACATTCCATCACAGATGGATGAATCTCAAGTCCACACCCAATA
CTGAGGAGTTACTGGAAAGAAGATAGCTGCTGGAGGAGGCTGAGGAAGTG
AGAATCATTATTTTTGAGGATATGGCCCCTGGTATGTTGCCTATGCTCCA
GTGGGTGGCATCCCCATCTACATGTGGGGACCATTAATTGGACTTTGTGG
GTCTTCTCAATAATTAATAAATAAGTAAATAAATTAATAATAAAT

Query= MSMg01no517_i01.g1 MSMg01no517_i01.g1 CHROMAT_FILE:
MSMg01no517_i01.g1 PHD_FILE: MSMg01no517_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:37 2005
         (467 letters)



>mm_chr4_39562658_39563525
          Length = 868

 Score =  828 bits (428), Expect = 0.0
 Identities = 458/468 (97%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagccactatgccttaagatctctatgcccagatccaggtcagaaacttctatcttcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 610 atagccactatgccttaagatctctatgcccagatccaggtcagaaacttctatctccca 551

                                                                       
Query: 61  gcctccagattagggtcacaggtcagccttccaattctggattgtagttcattccagata 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 550 gcctccagattagggtcacaggtgagccttccaattctggattgtagttcattccagata 491

                                                                       
Query: 121 tgatcaagttgacaaccaggaacagtcactataggtggtaacatcaagtgacttttaata 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 tgatcaagttgacaaccaggaacagccactataggtggtaacatcaagtgacttttaata 431

                                                                       
Query: 181 tgtttctgaaatgtttgaacttcttcc-tttttttttttttttgagaaatttctgttcta 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 430 tgtttctgaaatgtttgaacttcttccttttttttttttttttgagaaatttctgttcta 371

                                                                       
Query: 240 tcccaaagcacaaatttcatttatattaagctccctgctggctaatttctgagaatgtta 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 370 tcccaaagcacaaatttcatttatattaagctccctgctggcttatttctgagaatgtta 311

                                                                       
Query: 300 tggaaggaaagttaaaagtaatgtaagagctagaaggtaggaattagtgctgtaaagtgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 310 tggaaggaaagttaaaagtaatgtaagagctagaaggtaggaattagtgctgtaaagtgt 251

                                                                       
Query: 360 tgtcttctgcacgagaggctagtcatgctctcataaactctcagaagctgtggccacttt 419
           ||||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||
Sbjct: 250 tgtcttctgcacgtgaggctagtcacactctcataaactctcagaagctgtggctacttt 191

                                                           
Query: 420 cacaagatcaagacagtcaacattccatcacagatggatgaatctcaa 467
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cacaagatcaagacagtcaacattccatcacagatggatgaatctcaa 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)