BAC Information

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BAC

Clone NameMSMg01-517K02
Chromosome4 (Build37)
Map Location 34,370,954 - 34,371,323
singlet/doubletsinglet
Overlap genenone
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361
Downstream geneLOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517K02.T7 (MSMg01no517_k02.b1)MSMg01-517K02.TJ (MSMg01no517_k02.g1)
ACCAG589334AG589335
length748746
length of high quality
(start - end)
636 (38 - 673)485 (68 - 552)
definitionCHROMAT_FILE: MSMg01no517_k02.b1 PHD_FILE: MSMg01no517_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:47 2005CHROMAT_FILE: MSMg01no517_k02.g1 PHD_FILE: MSMg01no517_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTAGCTCTGAATCCCATTTTTTAACGGGGTTATTTGAATTTCTGGAGT
CCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCTATCAGAT
TTAGGATTGGTAAAAATTCTTTCCCAGTCTGTTGGTGGCCTTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTACAGAAGATTTGCAATTTTATGAGGTCCC
ATTTGTCAAATCTTGATCTTACAGCACAAGGCATTGCTGTTCTGTTTAGG
AATTTTTTCCCTGTGCCCATATCTTCCAGGCTTTTCCCTACTTTCTCCTC
TATTAATTTCAGTGTCTCTGGTCTTATGTAGAGGTCTTTGATTCACTTAG
ACTTGAGCTTTCTATAAGGAGATAAGAATGGATCAATTCACATTCTTCTA
CATGATAACTGCCAGTTGTGCTAACACCTTTTGTTGAAAATGCTGTCTTT
TTTTTCCACTGGATGATTTTCGCTCCTTTGTCAAAGATCAAGCGATAGCT
TTGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCAGTC
TGTCACTGTACCAGTACCATGCAGTTTTTATCACGATTCCTCTGTAGTAC
AGCTTAATGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTGTTGTTGAG
AATAGTTTTTGCTATCCTAGATTTTTTAATTTTCCAGATGAATTTGCA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTTGTTTTGAAATCACAGACTCATGCTTGG
TCTGCATTCAGGTTCCTACAAAATTTAGGAATCTCCTCAGGATGCTGAGG
ATGAGCAGGCGGATCTGTGCCTCTGCCCTCTTCCCACTGATAGACCAACT
AATAATAAATATTTAATTCAATATCAGAAGTGCCAGGCCAGGTATGGTGG
TATATACCTGTAGTGCCAGCACAAGGGAGGGTAGAGATAGGGGAGTCAGG
CATTTAAGGTCATGTTTGGCTGTAGAGTGAGTTCTAGACCAGTGTGACCT
ATATGAAGCCTTTTATTTTGGGGGTTCTGATGTACCCCATGCAGGCAAGC
AAGTACCAAAGAATCAAACTAAGGAAGGAGGATCACAAGTTCAAGGACAG
CCTGGGCTATAGGTTTGGGTTAGATATAGTAGAGCATTTGTTTGGCAACA
AAACAATGCAAAACAAAACAAAACCAGCCAAACAAACCCAAAACACCCCC
ATTCCTCAACCCAAAACACGAGAAGCACTTTCAGGTTCAACAAAGTAATC
CTACCAATAAAAGCAGAAATTTAAGAATTTCGACTTTGTAAGAGTTACAA
AGATCTGAGAATGATATCTTTATTAATTTGAACAGTGTTCATGGGTGTAC
TTAAATCACTGAAAAATTTCTAGACTCTTTCTAGTTATTTTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_k02.g1 MSMg01no517_k02.g1 CHROMAT_FILE:
MSMg01no517_k02.g1 PHD_FILE: MSMg01no517_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:47 2005
         (485 letters)



>mm_chr4_34370954_34371838
          Length = 885

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttgttttgaaatcacagactcatgcttggtctgcattcaggttcctacaaaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttcttgttttgaaatcacagactcatgcttggtctgcattcaggttcctacaaaattta 311

                                                                       
Query: 61  ggaatctcctcaggatgctgaggatgagcaggcggatctgtgcctctgccctcttcccac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaatctcctcaggatgctgagggtgagcaggcggatctgtgcctctgccctcttcccac 251

                                                                       
Query: 121 tgatagaccaactaataataaatatttaattcaatatcagaagtgccaggccaggtatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgatagaccaactaataataaatatttaattcaatatcagaagtgccaggccaggtatgg 191

                                                                       
Query: 181 tggtatatacctgtagtgccagcacaagggagggtagagataggggagtcaggcatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tggtatatacctgtagtgccagcacaagggagggtagagataggggagtcaggcatttaa 131

                                                                       
Query: 241 ggtcatgtttggctgtagagtgagttctagaccagtgtgacctatatgaagccttttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 130 ggtcatgtttggctgtagagtgagttctagaccagtgtgacctatatgaggccttttatt 71

                                                                       
Query: 301 ttgggggttctgatgtaccccatgcaggcaagcaagtaccaaagaatcaaactaaggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  ttgggggttctgatgtaccccatgcaggcaagcaagtaccaaagaatcaaactaaggaag 11

                     
Query: 361 gaggatcaca 370
           ||||||||||
Sbjct: 10  gaggatcaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)