BAC Information

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BAC

Clone NameMSMg01-517M11
Chromosome4 (Build37)
Map Location 114,917,942 - 114,918,569
singlet/doubletsinglet
Overlap geneLOC230639
Upstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042
Downstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517M11.T7 (MSMg01no517_m11.b1)MSMg01-517M11.TJ (MSMg01no517_m11.g1)
ACCAG589446AG589447
length748753
length of high quality
(start - end)		628 (39 - 666)595 (69 - 663)
definitionCHROMAT_FILE: MSMg01no517_m11.b1 PHD_FILE: MSMg01no517_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:59 2005CHROMAT_FILE: MSMg01no517_m11.g1 PHD_FILE: MSMg01no517_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CTGTGCTGTTCATGTGCTCATCCACTGACTGCACAAGGAACATTTTGTTC
TCTGCCAAGCTCAGCTGTCTTTCAGTTTCTCTTCCCACCAACAAGTGAAC
CCTAAAATGTTGTCTGCAATCCCTACTATACTCAAATGCAGTAGTGTGGG
GCACAGGGACTAGCTGTCAAAATAGGACTCTGGCAAATTTTGTTACGTAT
GTCACACAGTCATGATCTAAAAAACATATTGAATTGTCCTTACAGCAAGA
AAAGAAATGTTCTGGCCACCACGTGAACCTGGGCTGCCTGTAGAAAGGAG
TGTTCCTGGTGATTTATGCTTGTTACTAGCTTATGCGACAGGACCGGCTG
CATAGTAGGGCCTTAATCAATACTTAACGGACAGATGTGCAGAAGCAAAG
ACTCAGCAGCCTGAGGAATCGTGATCTCTCTCCATCCCTTCTGCATCCTG
GCTGCTTTCTGTCTTTGAGTCTACAGGAATCCTTTCAGCCCAGCCTCTTT
TATTCTTTCTCTTACCGGCTTTAGAGCAAGAGTCTATCTCTCTTGCCTCA
TGCCTACTGATAATTCACTCATGCACTCTCTGACTCCTCCCCTCATGTGC
TCATGTTTATAGAAATAAAGGATGATTGCTGTGGGCAAGGCTGATCATTT
TGCTGAGAACTCAAGGATGTCAGATTTCAGAGCTACATTTGCCACCAC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAAAATACTGGTAAAATAATTTCTCTCCTA
GAAACACTGATAATCTTTTTTAAGTAAACTGATTGTTAGACAATGTACAC
AGATATATAATGCATTTTAAATATTCTCTCTCTATGTCAGGTGGTATCAA
ATAAGGGTTTTTGAATATATTTCTTTTTTTAAAAAATTTATTTATTATTA
TATCTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAAAGGGTGTCAG
ATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAAC
TTAGGACCTTCAGAAGAGCAGTCAGTGATCTTAACTGCTGAGCCATCTCT
CCAGCACCCCCTTTTTTTCTTTTTTTTGAATATATTTCTAAATGATTCAT
TTTTAATATTTTATGCTCTTTTACTATGCTTAACTCCCAAAGAATATTTT
GCATGTTTTGAAACAATTTAGTTTTAAACATTAGATATGGATAGTATTAA
ATATTCATTAATGATATTTTTAGAGTATGAAAGGATATGAATATAAAAGT
TGAACAAAATTTTTATGTATTATTTGATTCTCAAAATACTCAATATTATT
AATATATTTGATGTATAAAATGCATTTAAATAATAAAAAAATTTAAGAAA
AAAAAAAGAATATGCTTGGGCAANGAGTGGCACTATTTTANGGATGTGGC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_m11.b1 MSMg01no517_m11.b1 CHROMAT_FILE:
MSMg01no517_m11.b1 PHD_FILE: MSMg01no517_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:59 2005
         (628 letters)



>mm_chr4_114917743_114918769
          Length = 1027

 Score =  774 bits (400), Expect = 0.0
 Identities = 571/634 (90%), Gaps = 16/634 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctgtgctgttcatgtgctcatccactgactgcacaaggaacattttgttctc 64
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 200 gaattcatctgtactgttcatgtgctcatccactgactgtacaaggaacattttgttctc 259

                                                                       
Query: 65  tgccaagctcagctgtctttcagtttctcttcccaccaacaagtgaaccctaaaatgttg 124
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct: 260 tgccaagctcagctgtctttcagtttctctttccaccaacaagtgaaccctatactgttg 319

                                                                       
Query: 125 tctgcaatccctactatactcaaatgcagtagtgtggggcacagggactagctgtcaaaa 184
           ||||||| ||| |||||||||  || ||||||   |||||||||||||||||||||||||
Sbjct: 320 tctgcaacccccactatactcggatacagtag---ggggcacagggactagctgtcaaaa 376

                                                                       
Query: 185 taggactctggcaaattttgtt-acgtatgtcacacagtcatgatctaaaaaacatattg 243
           ||||||||||||||||||| || | |||||||||||| |||| | |||||||| ||||||
Sbjct: 377 taggactctggcaaatttt-ttcatgtatgtcacacaatcattacctaaaaaaaatattg 435

                                                                       
Query: 244 aattgtccttacagcaagaaaagaaatgttctggccaccacgtgaacctgggctgcctgt 303
           |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct: 436 aattgtccttacagcaagaaaataaatgttctggccaccatgtgaacctgggcttcctgt 495

                                                                       
Query: 304 agaaaggagtgttcctgg-tgatttatgcttgttactagcttatgcgacaggaccggctg 362
            ||||||||||||||||  | |||||||| |||||||||||||| | |||||||| ||||
Sbjct: 496 ggaaaggagtgttcctgcct-atttatgcctgttactagcttatacaacaggaccagctg 554

                                                                       
Query: 363 catagtagggccttaatcaatacttaacggacagatg--------tgcagaagcaaagac 414
           ||||||||||||||| |||||||||||||||||||||        |||||| | || |||
Sbjct: 555 catagtagggccttagtcaatacttaacggacagatgaagggatgtgcagatggaaggac 614

                                                                       
Query: 415 tcagcagcctgaggaatcgtgatctctctccatcccttctgcatcctggctgctttctgt 474
           || |||||||||||||| |||| ||||||| ||||||| |||| |||||||| |||||||
Sbjct: 615 tcggcagcctgaggaattgtgacctctctctatcccttttgcaccctggctg-tttctgt 673

                                                                       
Query: 475 ctttgagtctacaggaatcctttcagcccagcctcttttattctttctcttaccggcttt 534
           |||||||||||||||| |||| |||||||| ||||||||||||||||| |||| || |||
Sbjct: 674 ctttgagtctacaggactcctctcagcccaacctcttttattctttcttttactggtttt 733

                                                                       
Query: 535 agagcaagagtctatctctcttgcctcatgcctactgataattcactcatgcactctctg 594
           ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 734 agaccaatagtctatctctcttgcctcatgcctactgaaaattcactcatccactctctg 793

                                             
Query: 595 actcctcccctcatgtgctcatgtttatagaaat 628
           |||||| | |||||||| ||||||||||||||||
Sbjct: 794 actcctacactcatgtgttcatgtttatagaaat 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space:   628506
Effective search space used:   628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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