XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GAACTCTGCTCCTGCTTCTTAAGTGGTGGTCTGCATCTGTACTACCACAG
GGCCTGTTGTAGTCTCAGGATTTGAATATTCACAGAACCTTCAGCCTGGC
TGAGAAGGAGTGCTCTGGTCAAGTCATTCCTGATCTCTTCAGTAGCGAAA
GACCTGGAAGCTGTACTTGCTTTAAAAGCAACGTCCACTTAGCAGTTTTA
GACTTACTATTTGATATAAATGTCTGAGTGATGTTGCTATATGTATAAAT
ACGATAATTTTGGATTTTCACTGTTTTTGGGTTTCCTGGGACTGAAGTCA
CAGGCGATTGTGAAGTACCATGTTGAGCGCTGGGAGTCAATTCAGGGCTC
TGCTCCTGAAATCTTTTCAGCCACTCCAAACTGTTTTGAGGACAGAAATT
ACAGGCTTAAAAACTATTTAAATGGTGGCAAGATGGCTAAGTGGGCATGT
CCTTTCTGTGCAGGACTGGTCAGCTGAACTCAATTCCTGGAAGTGCGTAA
GGTGGAAGGAAAGAACCTAATCCACAGAGCTGTCCTCACACCTCCACACA
TGCACCTCATGCACGTACACAGTGATAAGAAACAGAAAATTCAAATACAG
AGGGCTTGTTAAGGAATCATTGGGAAATCCTAGGTTTAATTTAAAAATAT
CCCTATAAATTTATTTATTTTGATATTTATTGATTGAGGTTTGGGATTTT
TTTN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGCATCCTTAGTCATCAGGGAAATGCAAATCAAA
ACAACCCTAAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGCTAGTGGGATTGCAAGCTTGTACAACCATTCTAGAAATCAGTC
TGGCAGTTTCTCAGAAAATGGACATGGTACTACCGGAGAATCCCGCAATA
CCTCTATTGGGCATATATCCAAAAGATATTCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCAAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGAAGGGCATCATCCTGCGTGAGGTAA
CCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCTGATCTCTTCTTAATCACCACTACTTTCTTAGCTCCAGATAACC
AGCATCAATGATCCCAGTAACTCCTTTTACTCATGACTCTAAAGTCAGAG
CCACGTGGCC

Query= MSMg01no517_p10.b1 MSMg01no517_p10.b1 CHROMAT_FILE:
MSMg01no517_p10.b1 PHD_FILE: MSMg01no517_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:14 2005
         (635 letters)



>mm_chr4_33443809_33444843
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 629/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaactctgctcctgcttcttaagtggtggtctgcatctgtactaccacaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaactctgctcctgcttcttaagtggtggtctgcatctgtactaccacaggg 264

                                                                       
Query: 65  cctgttgtagtctcaggatttgaatattcacagaaccttcagcctggctgagaaggagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgttgtagtctcaggatttgaatattcacagaaccttcagcctggctgagaaggagtg 324

                                                                       
Query: 125 ctctggtcaagtcattcctgatctcttcagtagcgaaagacctggaagctgtacttgctt 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctggtcaagtcatttctgatctcttcagtagcgaaagacctggaagctgtacttgctt 384

                                                                       
Query: 185 taaaagcaacgtccacttagcagttttagacttactatttgatataaatgtctgagtgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaaagcaacgtccacttagcagttttagacttactatttgatataaatgtctgagtgat 444

                                                                       
Query: 245 gttgctatatgtataaatacgataattttggattttcactgtttttgggtttcctgggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgctatatgtataaatacgataattttggattttcactgtttttgggtttcctgggac 504

                                                                       
Query: 305 tgaagtcacaggcgattgtgaagtaccatgttgagcgctgggagtcaattcagggctctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaagtcacaggcgattgtgaagtaccatgttgagcgctgggagtcaattcagggctctg 564

                                                                       
Query: 365 ctcctgaaatcttttcagccactccaaactgttttgaggacagaaattacaggcttaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcctgaaatcttttcagccactccaaactgttttgaggacagaaattacaggcttaaaa 624

                                                                       
Query: 425 actatttaaatggtggcaagatggctaagtgggcatgtcctttctgtgcaggactggtca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actatttaaatggtggcaagatggctaagtgggcatgtcctttctgtgcaggactggtca 684

                                                                       
Query: 485 gctgaactcaattcctggaagtgcgtaaggtggaaggaaagaacctaatccacagagctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgaactcaattcctggaagtgcgtaaggtggaaggaaagaacctaatccacagagctg 744

                                                                       
Query: 545 tcctcacacctccacacatgcacctcatgcacgtacacagtgataagaaacagaaaattc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcctcacacctccacacatgcacctcatgcacgtacacagtgataagaaacagaaaattc 804

                                          
Query: 605 aaatacagagggcttgttaaggaatcattgg 635
           |||||||||||||||||||||| ||||||||
Sbjct: 805 aaatacagagggcttgttaagggatcattgg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)