BAC Information

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BAC

Clone NameMSMg01-518D02
Chromosome4 (Build37)
Map Location 119,327,870 - 119,357,497
singlet/doubletdoublet
Overlap geneGuca2b
Upstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a
Downstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518D02.T7 (MSMg01no518_d02.b1)MSMg01-518D02.TJ (MSMg01no518_d02.g1)
ACCAG589759AG589760
length760757
length of high quality
(start - end)		627 (48 - 674)644 (76 - 719)
definitionCHROMAT_FILE: MSMg01no518_d02.b1 PHD_FILE: MSMg01no518_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:31 2005CHROMAT_FILE: MSMg01no518_d02.g1 PHD_FILE: MSMg01no518_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,356,957 - 119,357,497)(119,327,870 - 119,328,513)
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGCAAACTGTGGACTGGAAGATGAGGAAAATGTGGAGCAAA
TTCCACTATCACTTTGACAGGGTGTAGAATTACCATGGAAACACATCTCT
GGGAGAGTCTGAGAAAGTTTTTTTGTTGTTGTTTTGTTTTGTGTGTTTGT
TTGTTTTATGTTAGGTTACAAATGTGGGAAGACCACCCTAAATGTATGTG
GCATTATTCTGTGGCTAGGGTCCAGAACACTGACTCAAGCGGCTGATCAG
TAGTGTTCTTCTCCCTCTCCCCCACTCCACCCTGTTTCCTATGTATTCAA
GATGGCCAGTTGTCCCAAGCTCTGGCTGTTGTGCTTTCTCAGCCATGATG
GTCTGTACCCTCAGCCTGTGAGCCAACAACAGAAACACTTCATTCCTTTT
AGATGACATTCCTAGGATGCTTGCCACAAGCTGTTCTAATGTGGCAGTGT
GCCCTCCTTTTAAAAGTTATTTATTTATGCACTAAATTTATTTATTGTGA
GGAAGAGGGGTGTGTGCATGCCACAGCATGCCAGTGGAGGTCAGAAAACA
ACTTTAGGGAGTCAGGGTTGTTTTTTCTCCACCGTGTGGGCCCCAGGAAT
TGAACTCAGGTTGTCCAGCTTAGCATCAGGTGCCTTTCTTTACCCACTGA
GCTATGAGACCTTTATATAGGCACCGTCTGTTAAGGAGTGCTTACACTAA
ATAAAGGACN

NCCCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTAGCATGCATGAAGTCCTAC
GCTCAGTAGTCAATACCGCATAAACTGGCCATGGTGTGGATGGCTATAAC
CCCAGTACCAGGAAGGTGGAGCAGGAAGATCAGAAAGTCATGGATGTAAT
GAGTTAGAGGCTAGCCTGGGGTATATGAGACTCTATCTTAAAATCAGCAA
ACAAATGACTATCTAGGTGACTTCACTGGCAGTTCCCTGAGTGGGCGGGG
ACACAGCCCCTGAAAAGGGTAAATGATAAATGTGCACAGATGATGTTTAG
GTTCAAGTCAGATTCCAGCAGTGGCATGGTGGCGCACAGCAGGGTAAGGG
ACACAACCAGGCTACCCGGTTCCCCTGGCAGAGCCCTGAGGCAGGAGCCA
GGGAGTGAGGAGGAGCAGAGTGGAGCAGTAGGGTCTTTCGGCTGTCTGTG
TACTCAACTGGCACTTTGCACCCAGCCTTCCTCCCTCCTAGGTGCCCAGG
TCCAAGGCCAAGCAGCAAACCTGCCCTGTGGGAAATCCCATACTGGGAAT
TTCCAGGACAAGTCCTGACTGGAGTAAAGGCCTCAACCCTGGGATCCACC
TTCCATGGCTCAGGCCACAACAGAGCAGCAGTCACAGCCTTGTGTCCTGT
AAGTACTCTGCTGGGGAGGAGACACCATCTGGGAGTATTTCCCATTAACC
TAACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_d02.b1 MSMg01no518_d02.b1 CHROMAT_FILE:
MSMg01no518_d02.b1 PHD_FILE: MSMg01no518_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:31 2005
         (627 letters)



>mm_chr4_119356471_119357497
          Length = 1027

 Score = 1000 bits (517), Expect = 0.0
 Identities = 535/541 (98%)
 Strand = Plus / Minus

                                                                        
Query: 87   catggaaacacatctctgggagagtctgagaaagtttttttgttgttgttttgttttgtg 146
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1027 catggaaacacatctctgggagagtctgagaaagcttttttgttgttgttttgttttgtg 968

                                                                        
Query: 147  tgtttgtttgttttatgttaggttacaaatgtgggaagaccaccctaaatgtatgtggca 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  tgtttgtttgttttatgttaggttacaaatgtgggaagaccaccctaaatgtatgtggca 908

                                                                        
Query: 207  ttattctgtggctagggtccagaacactgactcaagcggctgatcagtagtgttcttctc 266
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 907  ttattctgtggctagggtccagaacactgactcaagtggctgatcagtagtgttcttctc 848

                                                                        
Query: 267  cctctcccccactccaccctgtttcctatgtattcaagatggccagttgtcccaagctct 326
            || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 847  cccctcccccactccaccctgtttcctatgtattcaagatggccagttgccccaagctct 788

                                                                        
Query: 327  ggctgttgtgctttctcagccatgatggtctgtaccctcagcctgtgagccaacaacaga 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  ggctgttgtgctttctcagccatgatggtctgtaccctcagcctgtgagccaacaacaga 728

                                                                        
Query: 387  aacacttcattccttttagatgacattcctaggatgcttgccacaagctgttctaatgtg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  aacacttcattccttttagatgacattcctaggatgcttgccacaagctgttctaatgtg 668

                                                                        
Query: 447  gcagtgtgccctccttttaaaagttatttatttatgcactaaatttatttattgtgagga 506
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 667  gcagtgtgccctccttttaaaatttatttatttatgcactaaatttatttattgtgagga 608

                                                                        
Query: 507  agaggggtgtgtgcatgccacagcatgccagtggaggtcagaaaacaactttagggagtc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  agaggggtgtgtgcatgccacagcatgccagtggaggtcagaaaacaactttagggagtc 548

                                                                        
Query: 567  agggttgttttttctccaccgtgtgggccccaggaattgaactcaggttgtccagcttag 626
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 547  agggttgttttttctccactgtgtgggccccaggaattgaactcaggttgtccagcttag 488

             
Query: 627  c 627
            |
Sbjct: 487  c 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_d02.g1 MSMg01no518_d02.g1 CHROMAT_FILE:
MSMg01no518_d02.g1 PHD_FILE: MSMg01no518_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:31 2005
         (644 letters)



>mm_chr4_119327670_119328713
          Length = 1044

 Score = 1191 bits (616), Expect = 0.0
 Identities = 637/644 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctagcatgcatgaagtcctacgctcagtagtcaataccgcataaactggccatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctagcatgcatgaagtcctacgctcagtagtcaataccgcataaactggccatggt 260

                                                                       
Query: 61  gtggatggctataaccccagtaccaggaaggtggagcaggaagatcagaaagtcatggat 120
           || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gtagatagctataaccccagtaccaggaaggtggagcaggaggatcagaaagtcatggat 320

                                                                       
Query: 121 gtaatgagttagaggctagcctggggtatatgagactctatcttaaaatcagcaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatgagttagaggctagcctggggtatatgagactctatcttaaaatcagcaaacaaa 380

                                                                       
Query: 181 tgactatctaggtgacttcactggcagttccctgagtgggcggggacacagcccctgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactatctaggtgacttcactggcagttccctgagtgggcggggacacagcccctgaaa 440

                                                                       
Query: 241 agggtaaatgataaatgtgcacagatgatgtttaggttcaagtcagattccagcagtggc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 agggtaaatgataaatgtgcacagatgatgtttaggctcaagtcagattccagcagtggc 500

                                                                       
Query: 301 atggtggcgcacagcagggtaagggacacaaccaggctacccggttcccctggcagagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atggtggcgcacagcagggtaagggacacaaccaggctacccggttcccctggcagaacc 560

                                                                       
Query: 361 ctgaggcaggagccagggagtgaggaggagcagagtggagcagtagggtctttcggctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaggcaggagccagggagtgaggaggagcagagtggagcagtagggtctttcggctgt 620

                                                                       
Query: 421 ctgtgtactcaactggcactttgcacccagccttcctccctcctaggtgcccaggtccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgtactcaactggcactttgcacccagccttcctccctcctaggtgcccaggtccaa 680

                                                                       
Query: 481 ggccaagcagcaaacctgccctgtgggaaatcccatactgggaatttccaggacaagtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccaagcagcaaacctgccctgtgggaaatcccatactgggaatttccaggacaagtcc 740

                                                                       
Query: 541 tgactggagtaaaggcctcaaccctgggatccaccttccatggctcaggccacaacagag 600
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgactggagtaaaggcctcagccctgggatccaccttccatggctcaggccacaacagag 800

                                                       
Query: 601 cagcagtcacagccttgtgtcctgtaagtactctgctggggagg 644
           |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 cagcagtcacagccttgtgtcctgtaagtactctgccggggagg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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