NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAAAAAGTTTTTAATTTCTTTTGTTTTTTTTTTATTTTTTCC
TTGACCAAGTTATCATTGAGTAGAGTCTTGTTCACTTTCCATTTGTATAT
GGAATTTCTGTTGTTTTTGTGAAGACCAGCTTTTGTCAATGGTGATCTGA
TAGGATGAATGGAATTATTTCAATATTCTCTTATCTGTTGAGGCCTGTTT
TGTGACTGATTATATGGTCAATTTTGGAGAAGGTACCATGAGGTGGTAAG
AAGAAGGTATATTCTTTTGATTTAGGATGAAATGTTCTATGGATATCTGT
TAAAACCATTTGGTTTATAACTTCCGTTAGTTTCACTATGTCTTTGTTTA
GCTTCTGTTTCCAGGATCTGTCCATTGATGAGAGTGGGGTGTTGAAGTAT
CCCACTATAATTGTGTGTGTTCTGATGTGTGCTTTGAGTTTAGTAAGGTT
TCTTTTGTAAATGTGGGTGTCCTTTCATTTGGAGAATAGTTGTTCAGAAT
TGAGAGTTCATTTAGGTAGATTTTTCCTTTGATGAGTATGAAGTGTCCTT
CCTTATCCTTTTGGATAACTTTTGGTTGAATGTTGATTTTATTTGATATT
AGAATGTCTACTCCAGCTATTTCTTGGGACCATTTGCTTGGAAGTTATTT
TCCAACCTTTAACTCTGAGGTAGTGTCTGTCTTTGTCACTTAGGTGAGTT
TCTTATGN

TGCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCTACTTACTCAATGCTC
AATCTTGACATTAATTTCTTCCTTAAAATAGAAATTGATTTTTTTTAAAA
AAAGTCAAGCCTTTTAAATGAATTAAAAGCAGCCAGCCCAGAAAATATAA
TTATCAATGGATGTCATTCTTAAGGAGGACATGTTGACACATTCCAAAGT
ATTTCACCATAAAGAGGAAAGAGAGGTGCTTTTTTTTCCCCTCTTAGTAA
CAACATTTATGTTGGAATAACTACAGTCTCAAAAAGAGCCATTGAACCAT
TATTCTAGGATGTGATGGATTTGCAAAAATATCCCCCAAATCCAATGTTT
GTTATATTTTTTATGTCTTCATAATGCTTCTACTGACCAGATAACTGGAA
AACTTTAATTGGTAGTTATTACTTTAATATAAATGTATACTTTATATTGA
AAAATATTGACTATTTTAATTAAAAATTTTACACAGGAGGATGAGGTAGA
GAAAAGACTCAGTAGTTTAGATTACTAGCTGTTGTTTCAGAGGTCTAGGG
TTCAATTTTCAGCCCCACATCTGTAACTCTATTTCCAGGACATCTGAAGC
CTCCTTCTGGTCTCTGCAGGTACCAGGCACACATGTGGCACACAGACTTA
CATGCAGGTAAAATATCTATATGCATGACAAAAATAATAATAAATGTTAA
GACTTTTAGGA

Query= MSMg01no518_e10.g1 MSMg01no518_e10.g1 CHROMAT_FILE:
MSMg01no518_e10.g1 PHD_FILE: MSMg01no518_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:38 2005
         (683 letters)



>mm_chr4_35544848_35545930
          Length = 1083

 Score = 1015 bits (525), Expect = 0.0
 Identities = 549/557 (98%)
 Strand = Plus / Minus

                                                                       
Query: 127 caatggatgtcattcttaaggaggacatgttgacacattccaaagtatttcaccataaag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 caatggatgtcattcttaaggaggacatgttgacacattccaaagtatttcaccataaag 535

                                                                       
Query: 187 aggaaagagaggtgcttttttttcccctcttagtaacaacatttatgttggaataactac 246
           ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 534 aggaaagagaggtgctttttttttctctgttagtaacaacatttatgttggaataactac 475

                                                                       
Query: 247 agtctcaaaaagagccattgaaccattattctaggatgtgatggatttgcaaaaatatcc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agtctcaaaaagagccattgaaccattattctaggatgtgatggatttgcaaaaatatcc 415

                                                                       
Query: 307 cccaaatccaatgtttgttatattttttatgtcttcataatgcttctactgaccagataa 366
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cccaaatccaatgtttgttatgttttttatgtcttcataatgcttctactgaccagataa 355

                                                                       
Query: 367 ctggaaaactttaattggtagttattactttaatataaatgtatactttatattgaaaaa 426
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgggaaactttaattggtagttattactttaatataaatgtatactttatattgaaaaa 295

                                                                       
Query: 427 tattgactattttaattaaaaattttacacaggaggatgaggtagagaaaagactcagta 486
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 294 tattgactattttaattaaaaatttttcacaggaggatgaggtagagaaaagactcagta 235

                                                                       
Query: 487 gtttagattactagctgttgtttcagaggtctagggttcaattttcagccccacatctgt 546
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gtttagattactagctgttctttcagaggtctagggttcaattttcagccccacatctgt 175

                                                                       
Query: 547 aactctatttccaggacatctgaagcctccttctggtctctgcaggtaccaggcacacat 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aactctatttccaggacatctgaagcctccttctggtctctgcaggtaccaggcacacat 115

                                                                       
Query: 607 gtggcacacagacttacatgcaggtaaaatatctatatgcatgacaaaaataataataaa 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gtggcacacagacttacatgcaggtaaaatatctatatgcatgacaaaaataataataaa 55

                            
Query: 667 tgttaagacttttagga 683
           |||||||| ||||||||
Sbjct: 54  tgttaagagttttagga 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)