NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGTCTAGGTTTGTTCCACATTTCAAGCCTTGACTCTTTTATTT
CTCCTTTAGGGCACCATGGTTCTGATCAATTTGACTGATCTGCATAGGGA
CCCCAAAGAGTGGGACACTCCAAATGTCTTCAATCCAGAGCACTTTTTGG
AGAATGGGCAGTTTAAGAAGAAAGAATCCTTTCTGCCTTTCTCAATGGGT
GAGTGGTAATGAGAAAGAAACAGGTCAGCATTCTATCACATCCCTTCCCT
TATCTTCTACCTAGAGACCTCCACTCTAATTTGACCATCTCCATATAGCT
CCATCTGGAGTCCAAGGTCTTGTTTGCTTCATGGTTTCAGAGCCCTCAGT
CTGTGGTCAGGTATCCACTAAGCCTATATTTGAAGTGACAATGAACATTT
TTTAGAACTTTTTAGCTGAAAAACCTGATCACCTCATGGTCCCCAGAAAC
CAAGAAAATGATGCTACTAGTTTGCAGTTATTCCACTAGGGACATGACTC
AAATTGCCTACTCAGAGGATCAACACCTTTCTCTATCTTTAATCCATATT
CATATGCACACATGCGCATTCCTGATGGAAAAACATATGCACAGACACAT
CCATACAAACAGATACATAAATATGGGTTAGAGAGTGGATAGGTACATAG
CCACTAAATTTTCTATCACTTACAAATATTTTCACCATCAAGATGGTCCT
TGAATTGGTTACTATTTTACTCATGTGAG

CCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTGAACCAATCCCTTAATGAATAA
AGGAGGTACTCACTGGGTGAGTAAGTAGGACTTCTGGGTTGGATTGAGGA
AGAAATGAAGCAGGAGAGAGTTAGGTCTTTTAAAATGGGGACAGCATAAA
GGTAAGATAAAGCTGCTAGTGTTTCCTGGTATCATGGCAGATACACAAGG
ATTCACCATGGGAGGAATCAGATTTTAATAAGGCTTACAAGATTAGGTTT
TAGTTGTTGCACCCAGAGATTGAGTTACCATTGTTTCTCAACTAAGTTTG
TGTTACATTTTCCTTCATGAGGTGGCTCGTCTGGGTTCAAGAGAGAAAGT
TATGGGAACAAAGCTTGAGTTTGTCTGATGGACACCTCAAAGGCCATGGG
GTTTTTAAACATAGGGCTGGCATGGTAGCGACTCCCCAGTAGGAACCTAG
AGAGCTGAGTGGAGAGATTGTAGAGTTCTCAGTCAGAGTCTCTACAAAAT
AAAAACAGTTTGGCAATTGCCCACCAATACATAGCTGGTCAGGCCAGGCT
GCCAGGACAAAGAGTTACTGACATAAGCATGGGAACAAGCCAGTTCTTTT
AAAATATTTCCTACAACAATACAGACCCATAGAGACAAATGCCAGCCCAG
GTGACTATACCCAGCAAAACTCTNCATTAACATAGATGGAGAAACCAACA
TATTCCATGACAAAAACACATTTACACN

Query= MSMg01no518_h18.b1 MSMg01no518_h18.b1 CHROMAT_FILE:
MSMg01no518_h18.b1 PHD_FILE: MSMg01no518_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:54 2005
         (678 letters)



>mm_chr4_95963670_95964748
          Length = 1079

 Score = 1247 bits (645), Expect = 0.0
 Identities = 664/675 (98%), Gaps = 9/675 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgtctaggtttgttccacatttcaagccttgactcttttatttctcctttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattccttgtctaggtttgttccacatttcaagccttgactcttttatttctcctttag 772

                                                                       
Query: 65  ggcaccatggttctgatcaatttgactgatctgcatagggaccccaaagagtgggacact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ggcaccatggttctgatcaatttgactgatctgcatagggaccccaaagagtgggacact 712

                                                                       
Query: 125 ccaaatgtcttcaatccagagcactttttggagaatgggcagtttaagaagaaagaatcc 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 711 ccaaatgtcttcaatccagagcactttttagagaatgggcagtttaagaagaaagaatcc 652

                                                                       
Query: 185 tttctgcctttctcaatgggtgagtggtaatgagaaagaaacaggtcagcattctatcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttctgcctttctcaatgggtgagtggtaatgagaaagaaacaggtcagcattctatcac 592

                                                                       
Query: 245 atcccttcccttatcttctacctagagacctccactctaatttgaccatctccatatagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atcccttcccttatcttctacctagagacctccactctaatttgaccatctccatatagc 532

                                                                       
Query: 305 tccatctggagtccaaggtcttgtttgcttcatggtttcagagccctcagtctgtggtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tccatctggagtccaaggtcttgtttgcttcatggtttcagagccctcagtctgtggtca 472

                                                                       
Query: 365 ggtatccactaagcctatatttgaagtgacaatgaaca-ttttttagaactttttagctg 423
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 471 ggtatccactaagcctatatttgaagtgacaatgaacatttttttagaactttttagctg 412

                                                                       
Query: 424 aaaaacctgatcacctcatggtccccagaaaccaagaaaatgatgctactagtttgcagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaaaacctgatcacctcatggtccccagaaaccaagaaaatgatgctactagtttgcagt 352

                                                                       
Query: 484 tattccactagggacatgactcaaattgcctactcagaggatcaacacctttctctatct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tattccactagggacatgactcaaattgcctactcagaggatcaacacctttctctatct 292

                                                                       
Query: 544 ttaatccatattcatatgcacacatgcgcattcctgatggaaaaacatatgcacagacac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttaatccatattcatatgcacacatgcgcattcctgatggaaaaacatatgcacagacac 232

                                                                       
Query: 604 atccatacaaacagatacataaatatgggttagagagtggataggtacatagccactaaa 663
           ||||||||||||||| ||||||||||        ||||||||||||||||||||||||||
Sbjct: 231 atccatacaaacagagacataaatat--------gagtggataggtacatagccactaaa 180

                          
Query: 664 ttttctatcacttac 678
           |||||||||||||||
Sbjct: 179 ttttctatcacttac 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space:   714092
Effective search space used:   714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)