Query= MSMg01no518_j03.b1 MSMg01no518_j03.b1 CHROMAT_FILE:
MSMg01no518_j03.b1 PHD_FILE: MSMg01no518_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:00 2005
(573 letters)
>mm_chr4_102962443_102963415
Length = 973
Score = 630 bits (326), Expect = 0.0
Identities = 371/396 (93%), Gaps = 18/396 (4%)
Strand = Plus / Minus
Query: 5 gaattccatactttttccagcttttaaaatgggccactcagaaagattaagcaacaagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaattccatactttttccagcttttaaaatgggccactcagaaagattaagcaacaagcc 323
Query: 65 caccatcacacagctgccatttctaccacctcctccttccaactcctcccatgcccctta 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caccatcacacagctgtcatttctaccacctcctccttccaactcctcccatgcccctta 263
Query: 125 actccccatcaaattcttaacttcttattgctgttaagtgtgtacatgtgcatgcggg-- 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actccccatcaaattcttaacttcttattgctgttaagtgtgtacatgtgcatgcggggt 203
Query: 183 --gtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagaga 240
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 202 gtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagaga 143
Query: 241 gaatgcttgcatgcatgtatttgtgtgtgtgagtgcttgtatgcatgcatgtgtgtgcat 300
|||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 142 gaatgcttgcatgcatgtatgtgtgtgtgtgagtgct----tgcatgcatg--------- 96
Query: 301 acatgtgtgtgcatacttgcatgtgtgcttgtgtgcatgcaagagcatgtgtgcatgtgt 360
| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 95 -cgtgtgtgtgcatatttgcatgtgtgcctgtgtgcatgcaagagcatgtgtgcatgtgt 37
Query: 361 gtcattgcatatgtacttggatgtgtatgtgcatgt 396
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gtcattgcatatgtacttggatgtgtatgtgcatgt 1
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 526 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 554
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 524 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 552
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 522 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 550
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 520 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 548
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 518 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 516 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 544
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 514 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 542
|||||||||||||||||||||||||||||
Sbjct: 204 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 513 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 540
||||||||||||||||||||||||||||
Sbjct: 203 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 9
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_j03.g1 MSMg01no518_j03.g1 CHROMAT_FILE:
MSMg01no518_j03.g1 PHD_FILE: MSMg01no518_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:00 2005
(605 letters)
>mm_chr4_102789052_102790059
Length = 1008
Score = 1135 bits (587), Expect = 0.0
Identities = 602/609 (98%), Gaps = 5/609 (0%)
Strand = Plus / Plus
Query: 1 agtaattgccatgaaaaaaaaaatacactactggagagaatagttgtgagtagcttaacg 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaattgccatgaaaaaaaaa-tacactactggagagaatagttgtgagtagcttaacg 259
Query: 61 tggtaaaaattaatattaattttcctcaaaataaggaggcttcttaggtttaattaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggtaaaaattaatattaattttcctcaaaataaggaggcttcttaggtttaattaggcc 319
Query: 121 taatctagtattccctttttttctttgtttttagaaaccaaaaaccttgcataaaagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatctagtattccctttttttctttgtttttagaaaccaaaaaccttgcataaaagttg 379
Query: 181 gaattagctacaattttattttttagtttaactcattttaatatagaactctaacagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattagctacaattttattttttagtttaactcattttaatatagaactctaacagact 439
Query: 241 caactacattggatattagtggatgtcacattaataaattctaatgattttgatcaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caactacattggatattagtggatgtcacattaataaattctaatgattttgatcaggtt 499
Query: 301 attggtgaatttttcctacgcatttactctgccatgtcctgctttcagatacatgttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attggtgaatttttcctacgcatttactctgccatgtcctgctttcagatacatgttttt 559
Query: 361 tgttt----tcttttcttttttgtgagcccaagaataaattttggctgattacatctgaa 416
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtttgttttcttttcttttttgtgagcccaagaataaattttggctgattacatctgaa 619
Query: 417 tacaaagagaatgcctcgtggacttaggcagagtactgaagaactggagtgatgggtgaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tacaaagagaatgcctcgtggacttaggcagagtactgaagaactggagtgatgggtgaa 679
Query: 477 atggatggagaagtcacttctagctttgcaggcagggcagaatgagccaagcatctggac 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 atggatggagaagtcacttctagctttgcaggcaggggagaatgagccaagcatctggac 739
Query: 537 tgtgtgtgaaaagagtaggtagcctcttcaagaggtctagtgagtctctggaagcctgta 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 tgtgtgtgaaaagagtaggtagcctcttcaagaggtgtagtgagtctctggaagcctgta 799
Query: 597 cacacagtc 605
|||||||||
Sbjct: 800 cacacagtc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1008
Length adjustment: 10
Effective length of query: 595
Effective length of database: 998
Effective search space: 593810
Effective search space used: 593810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
