BAC Information

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BAC

Clone NameMSMg01-518J10
Chromosome4 (Build37)
Map Location 75,293,434 - 75,293,810
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518J10.T7 (MSMg01no518_j10.b1)MSMg01-518J10.TJ (MSMg01no518_j10.g1)
ACCAG590062AG590063
length771775
length of high quality
(start - end)
646 (49 - 694)585 (83 - 667)
definitionCHROMAT_FILE: MSMg01no518_j10.b1 PHD_FILE: MSMg01no518_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:02 2005CHROMAT_FILE: MSMg01no518_j10.g1 PHD_FILE: MSMg01no518_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTCAAAATTGGGAACTATCTTGGAGGAAATGCTGTAGATAA
ACATCATTACTTCTCCAGTCCCACCCTGTAACTTAAGCCTGTTAATTTTA
AGTTCTAGTCAAAAACTCAGGTAAAAAGATGATTTTCTTCTTTCAAGATA
GAAAAGAGAGGTATACTCTTGTATATTTTTATATTAACTTTTTTATTAGG
TATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCC
TCCCCCCACTCACCTACCCACCCACCCCCACTTCTTGGCCTTGGTGTTCC
CCTGTACTGAGGCATATAAAGTTTGCACGACCAATGAGCCTCTCTCCACT
GATGGCTGACTAGGCCATCTTCTGATACATATGCAACTAGAGACACGAGC
TCCGGGGGGTAATTTTAAAATGGATACATATAACCCCAAAGTATGTACGT
TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAATTTACT
CTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTTC
CAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCTCCAAAGTAC
ATTTAAATGCCATAGTATGATATGAATGATTCAATTCATAAGTGCATTGT
GTAATACTGGAATCAGGTTCAATGTATATAACTCTTCAAACATCCATTTT
CATATAGTAAAAACTTTCACT
GGGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTCAGGGCAGTTTGT
GGTTTTTCTCAGAATTCAGTGTGGGGCAGGGTAGGGGAAATTTCTCTGGG
AACTGCTAATCTTGTTATGGTTATTTTTCTGAGAACAGCTCATTTTGTTT
TGGCACCTGTAGACTCAGTTATTTTGATGGCTATGTTTATGAAGTCCCTT
CAGAGGGGAAGGGGCTAGGTGGTCTTGAATTTATTTTGGATTCTACAAAG
CAACCTGAATTCATTCCCAGGAGCGTGCATTATTAAAAAAAAACATATTC
TGGCAACTTTTCCTTTGACTTCCACACAGATACTATGGCAAATATGTATC
CTCTAAATGGCAAAATTAATAAATACATGCTTTTTCTATGTTTTAAAAAT
ACTGAAGCTATATTTCTGAAAATAAATCTAAGCAATAAAGTAAGCCCAAC
TGTAGAAACCCTAAAGCAATATATAAACAACAACCACTAAAACAAACAAG
CAAACAAACAAACAAAAATCTCAACCAATCAATCAGCGACATGAATAAAC
AACAGAAAACCTAACTTCTTCAAAACTATTGATCTCAGAGTGGCCTCTAA
TGAAAGTGAGTTAGGTTTTTAAAACCCAGGGAACTCAAATTAAATAAGAA
TATATTCTAAGAAATCAAAGAAGAAATAATTTTTTGCAAGAATTCCCTAC
AGAGATTAAAAGCTAATAAAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_j10.b1 MSMg01no518_j10.b1 CHROMAT_FILE:
MSMg01no518_j10.b1 PHD_FILE: MSMg01no518_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:02 2005
         (646 letters)



>mm_chr4_75293434_75294479
          Length = 1046

 Score =  694 bits (359), Expect = 0.0
 Identities = 372/377 (98%), Gaps = 2/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtcaaaattgggaactatcttggaggaaatgctgtagataaacatcattact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggaattctgtcaaaattgggaactatcttggaggaaatgctgtagataaacatcattact 318

                                                                       
Query: 64  tctccagtcccaccctgtaacttaagcctgttaattttaagttctagtcaaaaactcagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctccagtcccaccctgtaacttaagcctgttaattttaagttctagtcaaaaactcagg 258

                                                                       
Query: 124 taaaaagatgattttcttctttcaagatagaaaagagaggtatactcttgtatattttta 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaaaagatgattttcatctttcaagatagaaaagagaggtatactcttgtatattttta 198

                                                                       
Query: 184 tattaacttttttattaggtattttcctcatttacatttccaatgctatcccaaaagtcc 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tattaacgtttttattaggtattttcctcatttacatttccaatgctatcccaaaagtcc 138

                                                                       
Query: 244 cccataccctccccccactcacctacccacccacccccacttcttggccttggtgttccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 137 cccataccctccccccactcacctacccacccacccccacttcttggccctggtgttccc 78

                                                                       
Query: 304 ctgtactgaggcatataaagtttgcacgaccaatgagcctctc--tccactgatggctga 361
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 77  ctgtactgaggcatataaagtttgcacgaccaatgagcctctctttccactgatggctga 18

                            
Query: 362 ctaggccatcttctgat 378
           |||||||||||||||||
Sbjct: 17  ctaggccatcttctgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)