BAC Information

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BAC

Clone NameMSMg01-518K07
Chromosome4 (Build37)
Map Location 88,018,534 - 88,019,202
singlet/doubletsinglet
Overlap geneBC057079
Upstream geneMllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518K07.T7 (MSMg01no518_k07.b1)MSMg01-518K07.TJ (MSMg01no518_k07.g1)
ACCAG590103AG590104
length737747
length of high quality
(start - end)		666 (72 - 737)669 (79 - 747)
definitionCHROMAT_FILE: MSMg01no518_k07.b1 PHD_FILE: MSMg01no518_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:06 2005CHROMAT_FILE: MSMg01no518_k07.g1 PHD_FILE: MSMg01no518_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGATCCG
CGGAATTCAAGAGTGCCATAGGTTTGCCTGGAAGAAAGAATTCCAACAAC
ATTACATCCTGTCTCCTGCTCTTATATTCTCTCAGCCCCCTCTTCCCCAG
TGTTCCCCGAGCCTTAGAGGGATGATTTAAGGCTGAGCATTTAACAGTCA
CTATTTTCAGCATGTTGACTATTTATGAGTCTTTTCACTAACTGCAGCTC
ACTGCAAAAGGAATTTTTCTGGTGAAAGCTGACAGCAGTGCTAATCTGTG
GGTATAAACAGAATGTTTAGCATGTCTGTTTAGCTAAATAGCAGCAATAG
CTTGCACTTTAGGTTAGGAAGACCCATGTCCATCCAAGCCAAAGACTTTT
TGACTGCATTTATAGTACCAGACACAAACAGACTTCAGATTCAACCAGAA
AGTGTTTGGTTGCTCCTACTACAGTCCTGCCACCATAGTACTGGTAGGCA
TGTCTTACTTACCTGGAGGATATATCCTGTGACACACAGGCCCTACAGCT
AAGTGGGACTACTGTTGATAGTTCTTTCCTAGCAGATGGCACTGTGCCTT
CTGGTACCGTGGAGACTAGCCAGTAGTGAAGATGCTTGTAGGTCAGTTCC
AGCTTGATTCTCAGAGCTAAAGTGCAATATGAGTTCAGAGAATACCTCTT
GTATCCAATCCGTACCACGTGATTTCTTAAAGGAAGG

NNTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTGAACAAAGACACTAGG
GCTGGCACTGTCAAGAAATTCCCACAGTAACTCAGAATGATGCCTTAAGG
AACCACGCACCAGATAGAAGGGCCATATCAGAGAAGACAGTGCCACCTGG
GAGACAACGACACAGTCACTTTCAAAACCAGGAACTCAATCTCTTAAAAA
CCAGAGGTGTTCTGCCGACTCGGTATGGCTGAGGAGTGCAATGCAGTAAT
GGCCGCTCTAATATCATGCGTCTATTAAGGTGTGAATACAAAACATGTAA
GCCCTAAGCCTCAGAAAGCAGTCTGACGATGCCATGGGCTGTGCAGGAAA
CCTCTGTCACTCTTATTCTGTCGTATGTGTGGATCACATGTAACCCTTCA
CTTTTTTTCTTGTGAGTTATTAAATTTAAAAATAGCCCACAGAGGCGATG
GAGCTGTGTCAGTCCTGAACTGGTCTATCCTGTGCCTGTACCAAGCATGG
TTTTTATTCTCAAAAACTATCTCTTCCTCAAAAGAGTTCACTGACGTTGT
CATCCTTCCTATCAGCAGCCCCACTGGGCTCTGGTGAGTGACATCCAGAC
AGTTAAACTCAAAAGCTCCTTCAGAAGGGAGTTATTAAAATTCAAATGAG
CTGGGCATATTGAAGAAGAAAGCGCTCGTTTGCATGCACACCTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_k07.g1 MSMg01no518_k07.g1 CHROMAT_FILE:
MSMg01no518_k07.g1 PHD_FILE: MSMg01no518_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:06 2005
         (669 letters)



>mm_chr4_88018334_88019402
          Length = 1069

 Score = 1270 bits (657), Expect = 0.0
 Identities = 666/669 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctgaacaaagacactagggctggcactgtcaagaaattcccacagtaactcagaat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aattctgaacaaagacactaaggctggcactgtcaagaaattcccacagtaactcagaat 810

                                                                       
Query: 61  gatgccttaaggaaccacgcaccagatagaagggccatatcagagaagacagtgccacct 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 809 gatgccttaaggaaccacgcaccagatagaagggccatatcagagaaggcagtgccacct 750

                                                                       
Query: 121 gggagacaacgacacagtcactttcaaaaccaggaactcaatctcttaaaaaccagaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gggagacaacgacacagtcactttcaaaaccaggaactcaatctcttaaaaaccagaggt 690

                                                                       
Query: 181 gttctgccgactcggtatggctgaggagtgcaatgcagtaatggccgctctaatatcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gttctgccgactcggtatggctgaggagtgcaatgcagtaatggccgctctaatatcatg 630

                                                                       
Query: 241 cgtctattaaggtgtgaatacaaaacatgtaagccctaagcctcagaaagcagtctgacg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cgtctattaaggtgcgaatacaaaacatgtaagccctaagcctcagaaagcagtctgacg 570

                                                                       
Query: 301 atgccatgggctgtgcaggaaacctctgtcactcttattctgtcgtatgtgtggatcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atgccatgggctgtgcaggaaacctctgtcactcttattctgtcgtatgtgtggatcaca 510

                                                                       
Query: 361 tgtaacccttcactttttttcttgtgagttattaaatttaaaaatagcccacagaggcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtaacccttcactttttttcttgtgagttattaaatttaaaaatagcccacagaggcga 450

                                                                       
Query: 421 tggagctgtgtcagtcctgaactggtctatcctgtgcctgtaccaagcatggtttttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tggagctgtgtcagtcctgaactggtctatcctgtgcctgtaccaagcatggtttttatt 390

                                                                       
Query: 481 ctcaaaaactatctcttcctcaaaagagttcactgacgttgtcatccttcctatcagcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctcaaaaactatctcttcctcaaaagagttcactgacgttgtcatccttcctatcagcag 330

                                                                       
Query: 541 ccccactgggctctggtgagtgacatccagacagttaaactcaaaagctccttcagaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccccactgggctctggtgagtgacatccagacagttaaactcaaaagctccttcagaagg 270

                                                                       
Query: 601 gagttattaaaattcaaatgagctgggcatattgaagaagaaagcgctcgtttgcatgca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagttattaaaattcaaatgagctgggcatattgaagaagaaagcgctcgtttgcatgca 210

                    
Query: 661 cacctctgc 669
           |||||||||
Sbjct: 209 cacctctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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