BAC Information

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BAC

Clone NameMSMg01-518L11
Chromosome4 (Build37)
Map Location 131,687,613 - 131,688,278
singlet/doubletsinglet
Overlap geneOprd1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835
Downstream geneLOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518L11.T7 (MSMg01no518_l11.b1)MSMg01-518L11.TJ (MSMg01no518_l11.g1)
ACCAG590159AG590160
length747746
length of high quality
(start - end)		700 (48 - 747)666 (77 - 742)
definitionCHROMAT_FILE: MSMg01no518_l11.b1 PHD_FILE: MSMg01no518_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:12 2005CHROMAT_FILE: MSMg01no518_l11.g1 PHD_FILE: MSMg01no518_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGG
TGTGCACCACCACGCCCAGCTTACAAATAATTTCTAATGGTTGTTGCACA
AACTACTGGCATAAAGTTGGACTACTTAACACTCCCTGTGAAAGTACCTT
CCAGTGGTATCTCTCTAGTGGATGACTATTACTCAAAGTAGGTACCGAGA
AAGCAAACCTTTCCCTGTCTTTCTCATGCAAAGGTATTGAGAAAACAAAC
AAACAATCTTTCAAGTCAATTATTATTATAGGCCATGATTTTGATAACAA
AGATGGTAAAGGAAGCCCAGGCTGTAAAGGACCCATTGGTTGAATTGCCT
TATAATTGTTCTTTACACAAACACTGACGGTACCTGTGTAGGCCCGAGCA
AATCCTCTGATGGTGCACCCGGCTGCACCTTAACCTGTTGTACTGTGCCA
TTTCCTGCACCTTCAGGCCCCTAGAAGCAGGGTTGGGTAGTAATTTACCT
TCCAGCCTAGCTTGCTTCCTGCTTTCGTCGTGTGGTACATTTCTGGTCTC
ATTCTCCAAGCCTGAACTTTTTTCTCCTCCCGTTGGCCCTTTTTCTTTTC
CAAGGACTTCTGCCTCTATCTGCAAACTCTCTAAACACATTGCCAACTCT
GTGATCCTCTCTAACAGAAGAGAATAGTCTGGCTTCTCATTAAACTN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCTGACCTAGGCCCAGCCTT
AGCTCCGGTCTCAGGATGGCGCTGGCCAGCATGATGTCAGGCATGGTCAC
AGAAGCAGGTAATCACAGCCATACTGGGGACTTTGTGGGTAAGGGACCAG
TAGAAATGTCTCCAGGAAAACCTTTCCTGGCCGGAGCCTGGAGACTTGCG
AGGATACACAGCTTCGTGATCTGAAAGCTGCGCACACTGTTGTCTGCCTG
CTCTGGGTGTGTGGGCACATGAGCATCTGCCTTGGCTACTAACACTCCCT
CCACAAAAAAGTTCAACGCCAACTGCATGGCGATTTGCCATTTATAGGGC
GTGGAAGCCTCATCAAGGGTCTGTCTGCTCACACCTGAATGGCTTCCTTC
CTGGAAAGCATGGATAAACTAGCAGTCTCGTGCCAAGGTACAATATTTCC
CTGGTCTTAAGAACAAGTCCCAATTAAGAAAGGGCTTTCTGACGGTCCCT
GAAAGGCAGTCTTTGCCTGGCACCCACCACACTGAAGTGCTAACAAACTA
CAGATTCCCAACCTCTTTTATAAAGAGGACAGAGTTCCTAATGCAATGCA
GCTCTTCTGGGGCATCAACATGGCGGCAGCCTGGTCTGACAAAGTTCTTT
ATCACGCTTTGTCACCCAGCCCCCCTCCCCTAAGTGATGGGGACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_l11.g1 MSMg01no518_l11.g1 CHROMAT_FILE:
MSMg01no518_l11.g1 PHD_FILE: MSMg01no518_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:12 2005
         (666 letters)



>mm_chr4_131687413_131688478
          Length = 1066

 Score = 1234 bits (638), Expect = 0.0
 Identities = 659/666 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagctgacctaggcccagccttagctccggtctcaggatggcgctggccagcatgatg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agtagctgacctaggcccagccttagctccggtctcaggatggctctggccagcatgatg 260

                                                                       
Query: 61  tcaggcatggtcacagaagcaggtaatcacagccatactggggactttgtgggtaaggga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggcatggtcacagaaggaggtaatcacagccatactggggactttgtgggtaaggga 320

                                                                       
Query: 121 ccagtagaaatgtctccaggaaaacctttcctggccggagcctggagacttgcgaggata 180
           |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ccagtagaaatgtctccaagcaaacctttcctggctggagcctggagacttgcgaggata 380

                                                                       
Query: 181 cacagcttcgtgatctgaaagctgcgcacactgttgtctgcctgctctgggtgtgtgggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagcttcgtgatctgaaagctgcgcacactgttgtctgcctgctctgggtgtgtgggc 440

                                                                       
Query: 241 acatgagcatctgccttggctactaacactccctccacaaaaaagttcaacgccaactgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgagcatctgccttggctactaacactccctccacaaaaaagttcaacgccaactgc 500

                                                                       
Query: 301 atggcgatttgccatttatagggcgtggaagcctcatcaagggtctgtctgctcacacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggcgatttgccatttatagggcgtggaagcctcatcaagggtctgtctgctcacacct 560

                                                                       
Query: 361 gaatggcttccttcctggaaagcatggataaactagcagtctcgtgccaaggtacaatat 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gaatggcttccttcctggaaagcatggataaactagcagtcttgtgccaaggtacaatat 620

                                                                       
Query: 421 ttccctggtcttaagaacaagtcccaattaagaaagggctttctgacggtccctgaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccctggtcttaagaacaagtcccaattaagaaagggctttctgacggtccctgaaagg 680

                                                                       
Query: 481 cagtctttgcctggcacccaccacactgaagtgctaacaaactacagattcccaacctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtctttgcctggcacccaccacactgaagtgctaacaaactacagattcccaacctct 740

                                                                       
Query: 541 tttataaagaggacagagttcctaatgcaatgcagctcttctggggcatcaacatggcgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 tttataaagaggacagagttcctaatgcaatgcagctcttctggggcatcaacatggcga 800

                                                                       
Query: 601 cagcctggtctgacaaagttctttatcacgctttgtcacccagcccccctcccctaagtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagcctggtctgacaaagttctttatcacgctttgtcacccagcccccctcccctaagtg 860

                 
Query: 661 atgggg 666
           ||||||
Sbjct: 861 atgggg 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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