XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCTCT
ACTTCCACTCTAGACCATGTCACCATATCATATACCTTGACATCCTATTA
GGTTTGTCTGTCATTTGTACTTCCTTCAGTGTGAAAAAAGATAATTGACC
TTATTTTAATTTGTACATGTTTTAATGTGTGTGTATGTGTGTGTGTGTGT
GTGTGTGTATGTGTGTGTGTGGTATGTATGTACTTATGTGTGTGCTCTTT
CATGTAAATGACCAAAGGCCAGAGGTTGATGTTAGATGTCTTGGACTCTT
CTCCCTACCTTTTTCATTTTTAAATGTTTTATTATTTTTAAAAAAAAATA
AATTCAAATACACTTTGATCACATTCTTCACATCACCAAGTTCATCCAAA
TCTTCTTCTCCTCCCTACCTATCCAACTTTATGTTCTTTTTCAAAAAAAC
AAAACAAAAAACCCAAACAAACAAAAAACCCTAAAACTCATTAAAACAAC
AAAACACTCAAACCCTAGAAAGCAAAGCACTCACCCTAAAAGCAAAGCAA
AGAAACAAAGAAAACCACCCAACTCTAACCAAATAACAGGACCCACCAAA
TCCCTCTATAGTCCCCAATCCGTTGGTCCCCTACTCCCTGACCCTACATC
TGTCCGGAGGAAATTTATATATTCCCCCGCTCTCCCACGTACAAAACCCA
TATCCATCCCCCCGCATGGCACCATTACCCAATGTAAGTTCCCTTCTACA
CCCTCCTTTTACAATACAATTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTGTTTAGTTCTGTACCCCATTATTTTGAGTTTCA
CAGATTTTACAATTGATATCATTGTTTAATCATTTGTTTGTTTATTAATT
TGTTTGTTTGTTTATTTATTTAACACTCCTAGTGTTATTTTATTCCCCTC
CTAGTCCACCCTTTGACTATTCCACATCAAGTACCTCCTCCCTGCCCCCC
ATATCTATGAGGATATTCCTACCCCCACCCCATTAGACATCAAAACTCCC
TGTGGCCTCCAGTCTCTTGAGGATTAGATACATCTTCTCTGATTTAACCC
AGACCCGGCAGTTCTCTGCTTATACGTGTTGGGACCTTATATCAGCTTGT
GTATGCTGCCTGGTTGGTGATCCAGTGTCTGAGAGATTTTGGGAGTCCAG
GTTAATTGAGACTGTTGGTTCTCCTACAGGGTCTTGCTCCTCCTCAGCTT
CTTCCAGCTTTTCCCTAATTCAACCACAAAGGTCAGCCACTTCTGTCCAT
TGGTTGAGTGGAAATATATGCATCTGACTCTTTCAGCTTCTTCTTGGGTC
TTTCAGAGGTCAGTCATGATAGGTCTCTTTTTGTGAGCGCTCCATAGCCT
AGGTAACAGTGTCAGGCCTCGGGCCATCTCCTTGAGCTCAATCCCCCCTT
GGGCTTGGTGCTTCACCTTCTTTTTCTTGGGCTCATCTCCATTTTCAGNC
ATGCAAATCTTTC

Query= MSMg01no519_b16.b1 MSMg01no519_b16.b1 CHROMAT_FILE:
MSMg01no519_b16.b1 PHD_FILE: MSMg01no519_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:43 2005
         (498 letters)



>mm_chr4_30863544_30864438
          Length = 895

 Score =  731 bits (378), Expect = 0.0
 Identities = 479/544 (88%), Gaps = 59/544 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctctacttccactctagaccatgtcaccatatcatataccttgacatcctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaattctgctctacttccactctagaccatgtcaccatatcatataccttgacatcctat 237

                                                                       
Query: 65  taggtttgtctgtcatttgtacttccttcagtgtgaaaaaagata----attgaccttat 120
           ||||||||||||||||||||||||||||||||||| |||||||||    |||    ||||
Sbjct: 238 taggtttgtctgtcatttgtacttccttcagtgtg-aaaaagataacggatt----ttat 292

                                                                       
Query: 121 tttaatttgtacatgttttaatg--tg--tgtgtatgtg--------tgtgtgtgtgtgt 168
           |||||||||||||||||||||||  ||  ||||||||||        |||||||||||||
Sbjct: 293 tttaatttgtacatgttttaatgtctgtatgtgtatgtgtgtgtgtttgtgtgtgtgtgt 352

                                                                       
Query: 169 gtgtgt----------------atgtgtgtgtgtggtatgtatgtacttatgtgtgtgct 212
           ||||||                ||||||||||||||||| ||||||||||||||||||||
Sbjct: 353 gtgtgtatgtgtgtgtgtgtacatgtgtgtgtgtggtatctatgtacttatgtgtgtgct 412

                                                                       
Query: 213 ctttcatgtaaatgaccaaaggccagaggttgatgttagatgtcttggactcttctccct 272
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctttcatgtaaatgagcaaaggccagaggttgatgttagatgtcttggactcttctccct 472

                                                                       
Query: 273 acctttttca-tttttaaatgttttattatttttaaaaaaaaataaattcaaatacactt 331
           ||||||| || |||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 473 acctttt-caatttttaaatgttttattattttttttaaaaaataaattcaaatacactt 531

                                                                       
Query: 332 tgatcacattcttcacatcaccaagttcatccaaatcttcttctcctccctacctatcca 391
           ||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||
Sbjct: 532 tgatcacattcttcacatcaccaagttcatccaaatcttcttctcc---ctacccatcca 588

                                                                       
Query: 392 actttatgttctttttcaaaaaaa--------------caaaacaaaaaa---cccaaac 434
           ||||||||||||||||||||||||              ||||||||||||   |||||||
Sbjct: 589 actttatgttctttttcaaaaaaaaaaaaaaaacaaaacaaaacaaaaaaaaacccaaac 648

                                                                       
Query: 435 aaacaaaaaaccctaaaactcattaaaacaacaaaacactcaaaccctagaaagcaaagc 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaacaaaaaaccctaaaactcattaaaacaacaaaacactcaaaccctagaaagcaaagc 708

               
Query: 495 actc 498
           ||||
Sbjct: 709 actc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 895
Length adjustment: 10
Effective length of query: 488
Effective length of database: 885
Effective search space:   431880
Effective search space used:   431880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)