Query= MSMg01no519_c15.b1 MSMg01no519_c15.b1 CHROMAT_FILE:
MSMg01no519_c15.b1 PHD_FILE: MSMg01no519_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:48 2005
(567 letters)
>mm_chr4_138668429_138669394
Length = 966
Score = 1062 bits (549), Expect = 0.0
Identities = 561/567 (98%), Gaps = 5/567 (0%)
Strand = Plus / Plus
Query: 1 cataagctgactgctgtcaccatcaggctctgcagaacaagctggagcaaagcatgaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataagctgactgctgtcaccatcaggctctgcagaacaagctggagcaaagcatgaccc 260
Query: 61 tgtgtggcccactctgtggaggctgaaactgcatcacactcccaacaagggatgagcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtggcccactctgtggaggctgaaactgcatcacactcccaacaagggatgagcagt 320
Query: 121 cccagagaaagaacaaaaagtcatacagagattccctgtaggacattaaaaaaaaaaaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagagaaagaacaaaaagtcatacagagattccctgtaggacattaaaaaaaaaaaa- 379
Query: 181 tcactggttggggggacctggagagatggctgagcagttgagcactggctgctcttacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcactggttggggggacctggagagatggctgagcagttgagcactggctgctcttacag 439
Query: 241 aggacccatatttgattcccagcactcacatggtggcttgccaccattcataactctagt 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 aggacccatatttgattcccagcactcacatggtggcttgccaccattcttaactctagt 499
Query: 301 tctagggggtccaatgccctcttctgacttctgcgggcaccaagcacacatgtggtgtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctagggggtccaatgccctcttctgacttctgcgggcaccaagcacacatgtggtgtac 559
Query: 361 aaatatacattcatataaaatagagtgaacagatgtaataaacaatttgttaatgtttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatatacattcatataaaatagagtgaacagatgtaataaacaatttgttaatgtttat 619
Query: 421 tgaaaaccattggggggggggggctggagagatggttgagagcactgactgctcttccag 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaaaaccattgggggggg----ctggagagatggttgagagcactgactgctcttccag 675
Query: 481 aggtcttgagttcaaatcccagcaaccacatggtggctcacacccatctgtaatgagatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aggtcttgagttcaaatcccagcaaccacatggtggctcacacccatctgtaatgagatc 735
Query: 541 taactccctcttctggtgtgtctgaag 567
|||||||||||||||||||||||||||
Sbjct: 736 taactccctcttctggtgtgtctgaag 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space: 532492
Effective search space used: 532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_c15.g1 MSMg01no519_c15.g1 CHROMAT_FILE:
MSMg01no519_c15.g1 PHD_FILE: MSMg01no519_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:48 2005
(200 letters)
>mm_chr4_138849570_138850172
Length = 603
Score = 340 bits (176), Expect = 3e-98
Identities = 188/192 (97%), Gaps = 4/192 (2%)
Strand = Plus / Minus
Query: 1 tttgagtgtgcccatc-ccagtctgtcactgccgttccttgtatggcagggaagaggcac 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tttgagtgtgcccatcaccagtctgtcactgccgttccttgtatggcagggaagaggcac 301
Query: 60 taccacataggtatggcatcaaggctagggagtggtgtgaagaaaaga-tgtcctgggca 118
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 300 taccacataggtatggcatcaaggctagggagtggtgtgaagaaaagattgtcctgggca 241
Query: 119 tcgaaagcctga-tctattccaattccaccctctgctga-gctgtgtgtgtgtgtgtgtg 176
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 240 tcgaaagcctgagtctattccaattccaccctctgctgaggctgtgtgtgtgtgtgtgtg 181
Query: 177 tgtgtgtgtgtg 188
||||||||||||
Sbjct: 180 tgtgtgtgtgtg 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 603
Length adjustment: 8
Effective length of query: 192
Effective length of database: 595
Effective search space: 114240
Effective search space used: 114240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
