BAC Information

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BAC

Clone NameMSMg01-519G05
Chromosome4 (Build37)
Map Location 77,552,073 - 77,552,247
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519G05.T7 (MSMg01no519_g05.b1)MSMg01-519G05.TJ (MSMg01no519_g05.g1)
ACCAG590674AG590675
length753733
length of high quality
(start - end)
182 (41 - 222)443 (72 - 514)
definitionCHROMAT_FILE: MSMg01no519_g05.b1 PHD_FILE: MSMg01no519_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:05 2005CHROMAT_FILE: MSMg01no519_g05.g1 PHD_FILE: MSMg01no519_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTAATTGATAAAATAAGTTGTGAGTTTATCTAACCACAAAACAGTCAGA
TTTAAAGGTTATCCTCTGATTCCTGACTCAACTTGAAATGAAAGACAATA
AATATGGTTTATTTTACAACTAGTTGTGGCTTATGAGTGTCACTTTGTCA
CATTTATTTTGCATGTAGTGGNTGGGGCCCTTTTCGTNTNNCTTTGTGGT
TTTTCCTCTCTTTCTCCCTTTTCTTTCTTTCTTTGTTCTCCTTTTTTTTT
CCCCTTTTCTGTTTTCTGAGCTTTCTTTTATCTTTGTTTTCCCCCTTATT
TTTTTCGTTTATTTACTCTGGTGGGTGATATATTTATATTCCACTAATTC
CCTTTTTATTTTTTATATTCTGAGTATTTTACATCGTCTTTTTTTCAATC
TTTTTTTTCTTCCTTATTTATTTTTTTTTTTTTCCCCGCTTTTCCTATTT
TTTTCGTTCATTTTTTCTCCCTACATTTATTCTCTTTCTTTTATCATTTC
TTCCCCTTTTTTTTTTATTACTCCCTCTCACTAATCCCCCCAAAATTATT
TACTCTTCACTCAATAATGTAACGTTTCCCCAGTATCGGCTATCCTTGTG
CCCTTTATCTTTTCACATCTGCCCTTTTTTTTTTTGCTTCTCCTACATCA
GAACGTCCTACTTTTTTTATTTTTCCCCCCCCCTTTTTCTTTTATTTCTT
TTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGATCCCTCACCCCATAAA
ACCCCCTAGCTTTCGAGCCTCGTGGCTGACACCAGTTATTTCCTGTGTGG
GATGCATGTCGTTCCGGAGCTCCTTCATTAAATGTCCTCATGTAATTACA
TCAAGAGATGGTCCTTCGTGATTTTTTGGGTGCACACCAAATCAGGAATT
GGGTGGGGGTTTCCCCACTATGTCTAAACACTCTCAGGAGACAGCTAGAT
CAGGCTCCTGTCATCAAGTAATTCTTGGCATCTGCAATAGTGACTGACAA
TTCAATATTAGCTGGGAATACCCAAGATAAAATTAACAGACCATATGAAG
CTCACTCAAGAAGACCAAAATGGAGATGTTTTAGTCTTAGAAGTAGGAAC
AAAATACTCATGGGACGTAGAGTGCAGGAGGAATTGGGAGGAAGAGAGGA
GGGGGGAAAGGGATCATGATCAGATATGTCATGATATTTGTTATTATATC
ATAGAGTTTATCCCTCTCCCTCATTTTTTATTTTTGTTTTTTCCCCCCCT
CCTGTTAATCTAGTTTCTTGTCATCATTTATACTTATTCGTTTTTATATT
TTTTCCTTTACCCCTTCTTTCTCTTACTAATTTTAACTGGTAATTTTCTA
TTTGTTTATTCTTTTTTTTTCTCCTTTTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_g05.b1 MSMg01no519_g05.b1 CHROMAT_FILE:
MSMg01no519_g05.b1 PHD_FILE: MSMg01no519_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:05 2005
         (182 letters)



>mm_chr4_77551869_77552449
          Length = 581

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%), Gaps = 1/176 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaattgataaaataagttgtgagtttatctaaccacaaaacagtcagattta 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaattcactaa-ggataaaataagttgtgagtttatctaaccacaaaacagtcagattta 321

                                                                       
Query: 65  aaggttatcctctgattcctgactcaacttgaaatgaaagacaataaatatggtttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaggttatcctctgattcctgactcaacttgaaatgaaagacaataaatatggtttattt 261

                                                                   
Query: 125 tacaactagttgtggcttatgagtgtcactttgtcacatttattttgcatgtagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tacaactagttgtggcttatgagtgtcactttgtcacatttattttgcatgtagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space:    99702
Effective search space used:    99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)