TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTAGCTCTGAGCCCCATTTTTTAATGTGATTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTTTTTTGCCTTACAGAGGATTTGCAGTTTCATGAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAGGCCTTAGCTGGGGATTTT
TTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTTTTTAGAATTAATTTTTT
TTAATTAGGTATTTTCCTCATTTACATTTCCAATGTTATGCAAAAAGTCC
CCAATACACCCCACACACACACTCCGCTACCCACCAACTCCCACTTTTTG
GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGG
GCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCA
GCTAGAGTCAAGAGCTCTAGGGCACTGGTTGGTTCATAATGTTGTTCCAC
CTATAGGGTTACAGATCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCA
CCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCAATCTACC
TGTGTGTTTTGCACGC

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCCTGGAAATTCTTTTGTTTTCTCATAG
TTTAAAAAGTAGAACGTCTTGCAATATTTGAGACTTAAGAATCCTGTGTC
GTCAGCCCCTGACAGCATTTAGACTATGCTTCCTTCTTTTCTTCACAATA
ACCATTAAAGATTTAGTTGAAAACTCAACCAAGTATAATTTTCCATGCTG
ATGTAAGTTAGGCTATCTAATCTTTACATAATTAGTAATGGCATCTCAGA
TCTAATAAATTTGTTTGAAACTTATTTTGGATTTTGCTTTATTTTAGATT
TCTGACAATGTGCAATAGACACTTTGGCAGCGTTATTGCACAAACTATTC
GGACTCAAAAGACAGATCAGTTTCCACTTTTCCTGATTATCATGGNGAAA
GCGATCATCTAATTGAAGTGGTAAAATGTGATACAAAGGTAAAGTATATT
TCCACAACGGGAAATAAAAAGGGTATTGGGAAACTTTTATCCCCNTTNTT
TNNNCNNCCNCCCCTTTATTTTTTTTACGCTTTACGTACTGTAGGTTGCC
TGTTCTCTTTTGCCGCCCCATTTTTCCTATTTCTCCGCTATAATATTTTG
TTTGCTGGCTTTCTATTCTCTTTTCTTACTCCCCAAATTACCCTATAGTG
CTCCTGCTGCTTCTCTTCTTG

Query= MSMg01no519_g08.g1 MSMg01no519_g08.g1 CHROMAT_FILE:
MSMg01no519_g08.g1 PHD_FILE: MSMg01no519_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:06 2005
         (391 letters)



>mm_chr4_109555764_109556553
          Length = 790

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%), Gaps = 1/391 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcctggaaattcttttgttttctcatagtttaaaaagtagaacgtcttgcaatatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctggaaattcttttgttttctcatagtttaaaaagtagaacgtcttgcaatatttg 260

                                                                       
Query: 61  agacttaagaatcctgtgtcgtcagcccctgacagcatttagactatgcttccttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacttaagaatcctgtgtcgtcagcccctgacagcatttagactatgcttccttctttt 320

                                                                       
Query: 121 cttcacaataaccattaaagatttagttgaaaactcaaccaagtataattttccatgctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 cttcacaataaccattaaagatttagttgaaaactcaaccaagtataattttccatactg 380

                                                                       
Query: 181 atgtaagttaggctatctaatctttacataattagtaatggcatctcagatctaataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtaagttaggctatctaatctttacataattagtaatggcatctcagatctaataaat 440

                                                                       
Query: 241 ttgtttgaaacttattttggattttgctttattttagatttctgacaatgtgcaatagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtttgaaacttattttggattttgctttattttagatttctgacaatgtgcaatagac 500

                                                                       
Query: 301 actttggcagcgttattgcacaaactattcggactcaaaagacagatcagtttccacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actttggcagcgttattgcacaaactattcggactcaaaagacagatcagtttccacttt 560

                                          
Query: 361 tcctgattatcatggngaaagcgatcatcta 391
           ||||||||||||||| |||||||||||||||
Sbjct: 561 tcctgattatcatgg-gaaagcgatcatcta 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 790
Length adjustment: 9
Effective length of query: 382
Effective length of database: 781
Effective search space:   298342
Effective search space used:   298342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)