XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGTGTCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCGCCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACACCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCAACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATGGATTCGCATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
GGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTAAAGCTTTATATCAGGTATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAGAAGACTTTTTGCTATCCTAGGT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTCATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCATTTTCTTTTAATTGGGTTAATTTGTTTTT
TGTTGTACATTAACCCTCTACCAGATGTAGGATTGGTAAGGGTATTTTCC
AATCTGCTGGTTGCCTTGGAGTCTAATTTTCGAGTCCTATTTATATTTTG
TACATTAACCCTCTACCAGATGTAGGATTGGTAAGGGTATTTTCCAATCT
GCTGGTTGCCATTTGGTCTTATTGACAGTGTCCTTTACCTTACAGACACC
TTTGTTTCATGAGATCCTATTTATCACTTCTTGGTCTTAGAGTCTGAGTC
ATTGGTGGAAATTTCCCTATACCAATGGATTCAAGGCCCTTTTCCACTCT
ATCTTCTATTAGATTCAGTGTATCTGATTATATGTTGAAGTCCTCGATCC
ACTTGGACTTGATACAAATTGATGCATAGTTTGCTCTTTAATTAAGCATT
TAAAAAATTTACTGTTTGAGAATTTCAAACATGTATACAGTATAATGAAA
TATAATTAATATCTGCCAACTCTCATTTTAGAATGAAAGCACAATAGTTA
TACAATAGTACACTAATGATTATAATTTAAA

Query= MSMg01no519_l01.g1 MSMg01no519_l01.g1 CHROMAT_FILE:
MSMg01no519_l01.g1 PHD_FILE: MSMg01no519_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:29 2005
         (657 letters)



>mm_chr4_27193392_27194448
          Length = 1057

 Score =  812 bits (420), Expect = 0.0
 Identities = 452/464 (97%), Gaps = 4/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 196 ttggagtctaattttcgagtcctatttatattttgtacattaaccctctaccagatgtag 255
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttggagtctaatttttgagtcctatttatattttgtacattaaccctctaccagatgtag 455

                                                                       
Query: 256 gattggtaagggtattttccaatctgctggttgccatttggtcttattgacagtgtcctt 315
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 456 gattggtaagggtattttccaatctgctggtttccatttggtcttattgacagtgtcctt 515

                                                                       
Query: 316 taccttacagacacctt--tgtttcatgagatcctatttatcacttcttggtcttagagt 373
           ||||||||||  |||||  ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 516 taccttacag--acctttgtgtttcatgagatcccatttatcacttcttggtcttagagt 573

                                                                       
Query: 374 ctgagtcattggtggaaatttccctataccaatggattcaaggcccttttccactctatc 433
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 574 ctgagtcattggtggaaatttccctataccaatggcttcaaggctcttttccactctatc 633

                                                                       
Query: 434 ttctattagattcagtgtatctgattatatgttgaagtcctcgatccacttggacttgat 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttctattagattcagtgtatctgattatatgttgaagtcctcgatccacttggacttgat 693

                                                                       
Query: 494 acaaattgatgcatagtttgctctttaattaagcatttaaaaaatttactgtttgagaat 553
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acaaattgatgcatagtttgttctttaattaagcatttaaaaaatttactgtttgagaat 753

                                                                       
Query: 554 ttcaaacatgtatacagtataatgaaatataattaatatctgccaactctcattttagaa 613
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 754 ttcaaacatgtatacagtataatgaaatataattaatatatgccaactctcattttagaa 813

                                                       
Query: 614 tgaaagcacaatagttatacaatagtacactaatgattataatt 657
           ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 814 tgaaagcacaatagttagacaatagtacactaatgattataatt 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)