Query= MSMg01no519_o04.b1 MSMg01no519_o04.b1 CHROMAT_FILE:
MSMg01no519_o04.b1 PHD_FILE: MSMg01no519_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:44 2005
(637 letters)
>mm_chr4_48933864_48934900
Length = 1037
Score = 1208 bits (625), Expect = 0.0
Identities = 631/633 (99%)
Strand = Plus / Plus
Query: 5 gaattctctaagagtcactcctgtggtggtttgaacgggaatggcccccataggctcata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaagagtcactcctgtggtggtttgaacgggaatggcccccataggctcata 264
Query: 65 tgtttgactgcttgggcattagggagtggcactgcttgcgagggattagaaggtgtggcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttgactgcttgggcattagggagtggcactgcttgcgagggattagaaggtgtggcc 324
Query: 125 ttgtttaaggaagcatgtcactgggggttggcttggaggtttcaagcagcccattccaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtttaaggaagcatgtcactgggggttggcttggaggtttcaagcagcccattccaaa 384
Query: 185 ctaagagtctctcccttcctgctgcctgagatatggatgcaaaattctgagctcctcctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaagagtctctcccttcctgctgcctgagatatggatgcaaaattctgagctcctcctc 444
Query: 245 aagcaccaggtctccctgtcatgctgataatggagggaacctcagaacagtaagccgacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcaccaggtctccctgtcatgctgataatggagggaacctcagaacagtaagccgacc 504
Query: 305 cctgttaaatgctttcctttataagagttgacatggccatgatgtctcttcacagcaata 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 cctgttaaatgctttcctttataagagttgccatggccatgatgtctcttcacagcaata 564
Query: 365 gaacactgactaagacagttctctataccctggcataagtatttgaagataaactcactt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaacactgactaagacagttctctataccctggcataagtatttgaagataaactcactt 624
Query: 425 ttctgtatcacataaaagttcttcatagtttattatgtgacttcgtattttatttcagat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctgtatcacataaaagttcttcatagtttattatgtgacttcgtattttatttcagat 684
Query: 485 agaaaggatggttttcattttgtcattatatttgtttatatttttaattattttattagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaaaggatggttttcattttgtcattatatttgtttatatttttaattattttattagc 744
Query: 545 atatatttattgcaaatatttcaaaaagcatttttattcaaggatattggtgttttaatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atatatttattgcaaatatttcaaaaagcatttttattcaaggatattggtgttttaatt 804
Query: 605 aggggcgaggatttatctctaaattatgggtct 637
||||||||| |||||||||||||||||||||||
Sbjct: 805 aggggcgagaatttatctctaaattatgggtct 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_o04.g1 MSMg01no519_o04.g1 CHROMAT_FILE:
MSMg01no519_o04.g1 PHD_FILE: MSMg01no519_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:45 2005
(613 letters)
>mm_chr4_49082143_49083154
Length = 1012
Score = 1133 bits (586), Expect = 0.0
Identities = 604/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Minus
Query: 1 tcagaaagacaggagggttggcccagcatcacaaagctaatgaatgacacaactgaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tcagaaagacaggagggttggcccagcatcacaaagctaatgaatgacacaactgaggcc 750
Query: 61 cttagcttaacagagcagggaaatagaattagcctgtttagaagttgtggttttatttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cttagcttaacagagcagggaaatagaattagcctgtttagaagttgtggttttatttat 690
Query: 121 gccatagcatgagcaaaactttccagataagcataaggaggagcaaactgtttgattaaa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 689 gccatagcatgagcaaaactttccagataagcataagaaggagcaaactgtttgattaaa 630
Query: 181 gatgacatgtcaaatgtattcattttggggattcatttcttaaggttcaagttggcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gatgacatgtcaaatgtattcattttggggattcatttcttaaggttcaagttggcaaga 570
Query: 241 tgccaaattgaaaactaaatccctagtaagacgttcacagatgaataccttccctaggaa 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 tgccaaattgaaaactaaatccctagtaatacgttcacagatgaataccttccctaggaa 510
Query: 301 acttgggtaacatctcatttcgcatcaagaatgttgcctggcttcaaagtattatgcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acttgggtaacatctcatttcgcatcaagaatgttgcctggcttcaaagtattatgcaaa 450
Query: 361 tgtgagaccctcgggtctttgaggagaacaaggagagggggatgagatgggcaggttggg 420
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 449 tgtgagaccctccggtctttgaggagaacaaggagtgggggatgagatgggcaggttggg 390
Query: 421 gctggaaaatgagaaggtaatctttgcagaggctcctgagtgacatgtacatgaagcgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctggaaaatgagaaggtaatctttgcagaggctcctgagtgacatgtacatgaagcgtg 330
Query: 481 agtttcaatttggtagcaattcattgcacaagctagtttttgtgatccaagttcccagcc 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtttcaatttgatagcaattcattgcacaagctagtttttgtgatccaagttcccagcc 270
Query: 541 cccacttcttgacttggggagttgtttttgcagtcagatgtagtggcttcagcattgact 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 cccacttcttgacttggggagttg-ttttgcagtcagatgtagtggcttcagcattgact 211
Query: 601 taacagacta 610
||||||||||
Sbjct: 210 taacagacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space: 604206
Effective search space used: 604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
