TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGTTTCTCTGTTGTCAAGAGCCTTCGACCAACCCCTGGGTGAAAGGTT
CCTTTCTTTTCTCAGGTCTCCCTGGATTGCTGTCTTTCTACCTCAAATCC
ACCCTATTATATTAAAATAAAAAATGTAAAACAATATACAATCTTCAGAC
AATATTAGATGGCAAGTTTTCATTTCCAGTTATGGTGAATCCAGTATGAA
CTCTAAATAACCACAAAAAAACATAAAAATAAAATAAAATAGTGAAGCCC
ATTTAAAGGTAATGAAAAGTATATAAAAGGTGAAAATACTCAATTTTGTT
TGTCTTTGTTTTGTGTAGACAACGTCTTGCTCTATAGTCCTGGATGGTCT
GAAACTTGCTATATAGAACAAGTTGACTTCAAACTTGTGTCTATCCTTCT
GCCTCTGCCTCCAGGATACTGAAATAACAGGCACACACTTCCACTCCTGG
ATAGTTTTTAGAGGAAGGATATGACACTGGATAATTGTTCCTTTTGGTTT
ATTGAGGCATGGTCTCACTATGCAGACATAGCTGGCCTGGAACTCACAGA
GATGTGCTTGCCTCTGCCTGTAGAATGCTGGAATTAAAAGTATGTGCCAC
CGCACCCAGAAACTTCTTTTTATGAGACTACTGGAACTGATATATAAAAT
AGTTCCAGCAAGATAGCTGAGCAAATA

ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAGTTGGGGACCCCTATGGTTGAATTAGGG
AAAGGCTGGAAGAAGCTGAGGAAGAGGGCAACCCCATAGGAAGACCAGCA
GTCTCAACTAACCTGGACCCCTGAGATCTTTCAGACACTGAGTCACCAAC
CAGGCAGTGTACACCAGCTGATATGAAGGCCCTGATACATATACAGCAGA
GAACTGCCTGGTCTGCCCTCAGTGAGAGAAGAATCATCTAACCCTCCAGA
GACTTGAGGTCCCAGGGAGTGGGGAGGTCTAGGGGGTGGGGGTGGGGACA
CTTTCTTGTAGATTGGTGGCGGTGTGTTGTTACATTTTTCTGTTTTATTT
TTACCCCCCTTGTTTCTTTTTTTTCTATTTGGTCCGCTTCCTTTTTTCTC
TTTTTTTTTTTTATTTCTGTTTTTTTCTTTCTTTTTACTTTTATTTACAC
CGTTTTTTTTTTGTACTCCAACTGTGAATTTTTTATTCTCTTTGTTGGTT
TTTGACGTGAAATACTTTTCAGCCCTGGTGGGTCTATTTTTTTTTCGGCT
GTTTTACCGCACTCCCCTCAGCTATTATTTTTTGTTTATCTGCTCGGTCC
AACGCTTTTCTATAATTTAATATTCTCTAGCCTTTATCACCGTTGTTTTG
CTTTTTCACTATTTTTGAGCGTGTATCCGATTTTTAATCCCCATAGCTAT
TAATTTTTTTCCCCGATTTACTCCTT

Query= MSMg01no519_o05.b1 MSMg01no519_o05.b1 CHROMAT_FILE:
MSMg01no519_o05.b1 PHD_FILE: MSMg01no519_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:45 2005
         (673 letters)



>mm_chr4_34371657_34372729
          Length = 1073

 Score = 1278 bits (661), Expect = 0.0
 Identities = 667/669 (99%), Gaps = 1/669 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttctctgttgtcaagagccttcgaccaacccctgggtgaaaggttccttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttctctgttgtcaagagccttcgaccaacccctgggtgaaaggttccttt 264

                                                                       
Query: 65  cttttctcaggtctccctggattgctgtctttctacctcaaatccaccctattatattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttttctcaggtctccctggattgctgtctttctacctcaaatccaccctattatattaa 324

                                                                       
Query: 125 aataaaaaatgtaaaacaatatacaatcttcagacaatattagatggcaagttttcattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataaaaaatgtaaaacaatatacaatcttcagacaatattagatggcaagttttcattt 384

                                                                       
Query: 185 ccagttatggtgaatccagtatgaactctaaataaccacaaaaaaacataaaaataaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 ccagttatggtgaatccagtatgaactctaaataaccacaaaaaa-cataaaaataaaat 443

                                                                       
Query: 245 aaaatagtgaagcccatttaaaggtaatgaaaagtatataaaaggtgaaaatactcaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaatagtgaagcccatttaaaggtaatgaaaagtatataaaaggtgaaaatactcaatt 503

                                                                       
Query: 305 ttgtttgtctttgttttgtgtagacaacgtcttgctctatagtcctggatggtctgaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgtttgtctttgttttgtgtagacaacgtcttgctctatagtcctggatggtctgaaac 563

                                                                       
Query: 365 ttgctatatagaacaagttgacttcaaacttgtgtctatccttctgcctctgcctccagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgctatatagaacaagttgacttcaaacttgtgtctatccttctgcctctgcctccagg 623

                                                                       
Query: 425 atactgaaataacaggcacacacttccactcctggatagtttttagaggaaggatatgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atactgaaataacaggcacacacttccactcctggatagtttttagaggaaggatatgac 683

                                                                       
Query: 485 actggataattgttccttttggtttattgaggcatggtctcactatgcagacatagctgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actggataattgttccttttggtttattgaggcatggtctcactatgcagacatagctgg 743

                                                                       
Query: 545 cctggaactcacagagatgtgcttgcctctgcctgtagaatgctggaattaaaagtatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctggaactcacagagatgtgcttgcctctgcctgtagaatgctggaattaaaagtatgt 803

                                                                       
Query: 605 gccaccgcacccagaaacttctttttatgagactactggaactgatatataaaatagttc 664
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 804 gccaccgcacccagaaacttctttttatgagactactggaactgaaatataaaatagttc 863

                    
Query: 665 cagcaagat 673
           |||||||||
Sbjct: 864 cagcaagat 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)