NNNNNNNTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACAGAAGAATTTCTAATGGTCCAGAATCACTTAAAG
AAATGCTCAATGTCTTTGCTATTCTGTTTTTTTTTTTTTTACAGATGAAT
TTGAGAATTGCTCTTTCCATGTCTTTGAAGAATTTTGTGGGGATTTTGAT
GGGGATTGCATCTAATCTGTATAATGCTTTTGGTAGGATGACCAATTTTA
CTATGTTAATCCTGTCTATCCATGAGCATGGGGAATCTCAAAGAAAATTT
TCATATGTTTGGTTAGAGTTACCCCAAGATATTTTATAATTTTTGTGTTA
ATCCTGCTCGTCCATGAGCATGGGTAATCTCTCCATTTTCTGAGGTCTTC
TTTGATTTCTTTCTTGAGAAACTTGAGGTTCTTGTCAAACAGATTTTTTA
CATATTTGGTTAGAGTTACCCCAAGATATATTATAATTTTTGTGGCTATT
AAGAAGGATGTTGTTTCCCTAATTTCTTTATCAGCCCATTTACCATTTGT
ATAAAGGGAGGCTACTAATTTATTTGAGTTAACTTTGTATCCAGCTACTT
TGCTGATGTTATTTATTAACTGGAGAAATTCTTTGGTAGAATTTTTGGGA
TTGCTTATGTATGCTATCATATCATCTAGAAATAGTAATACCTTGACTTC
TTCTTCACCAGTTTACATCCCCTTGATCTCCTTTTTGTCTTATTGCTCTA
GCTAGAACTN

NAATTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGGTGTTGAAATT
GATCTGATAATGTCTCTATCCACATCTGAATATTTTCTCATAGTCTTTTA
GGAAAAATAATGTGCAGATTATATAGTCGACAGTTAGCTATAAAATTATA
AGATTAAAGGCCTTATTTACATGAGGCTCTTACACTAGTTATATGTTAGT
TCCCTCATGTCAATAACTAACATAGGTGTACTAAGGACTATTACTGCAAT
AAAGAAAAACAATATTTTTACATAGCTTAGCTGCTTTTATATTTAGGTGT
TTTCTAAATTGTGAAGTGTATAAAGGTAGTGTGCATCACTACACAAATGT
TAATATTACTAAATATCAAATTAAAAAGAAGTAACAGAATACATGCTTCC
AAAAGCTATAAAATTATTGTGAGAATTACAAAAACCACCAATGTCTTATT
TCTCTTGGGTTTGAGTGCCATCTTTCTCCTCTCATTTCCCCTTTCTTATA
TCCCTCTCTCTATTGCTTTCTTCTTTACATTCTCACTTACTTTCAGATTC
TGGGTACAACTGATAATTTAAACTTCACGAGTTCATTACTTAAGATAATT
CAGTATTATCTATATGGCATTCCTACCATGGATCTTTATTTTTCTTGGCT
AAGACAGTCACTGAAGCCCAGTGCTGCATGCGACCTAATTATTT

Query= MSMg01no520_b24.g1 MSMg01no520_b24.g1 CHROMAT_FILE:
MSMg01no520_b24.g1 PHD_FILE: MSMg01no520_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:04 2005
         (622 letters)



>mm_chr4_78847409_78848431
          Length = 1023

 Score = 1166 bits (603), Expect = 0.0
 Identities = 618/623 (99%), Gaps = 1/623 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaggtgttgaaattgatctgataatgtctctatccacatctgaatattttctcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 attaaggtgttgaaattgatctgataatgtctctatccacatctgaatattttctcatag 764

                                                                       
Query: 61  tcttttaggaaaaataatgtgcagattatatagtcgacagttagctataaaattataaga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 763 tcttttaggaaaaataatgtgcagattatatagtcgacagttaactataaaattataaga 704

                                                                       
Query: 121 ttaaaggccttatttacatgaggctcttacactagttatatgttagttccctcatgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttaaaggccttatttacatgaggctcttacactagttatatgttagttccctcatgtcaa 644

                                                                       
Query: 181 taactaacataggtgtactaaggactattactgcaataaagaaaaacaatatttttacat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 643 taactaacataggtgtactaaggactattactgcaataaataaaaacaatatttttacat 584

                                                                       
Query: 241 agcttagctgcttttatatttaggtgttttctaaattgtgaagtgtataaaggtagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agcttagctgcttttatatttaggtgttttctaaattgtgaagtgtataaaggtagtgtg 524

                                                                       
Query: 301 catcactacacaaatgttaatattactaaatatcaaattaaaaagaagtaacagaataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 catcactacacaaatgttaatattactaaatatcaaattaaaaagaagtaacagaataca 464

                                                                       
Query: 361 tgcttccaaaagctataaaattattgtgagaattacaaaaaccaccaatgtcttatttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgcttccaaaagctataaaattattgtgagaattacaaaaaccaccaatgtcttatttct 404

                                                                       
Query: 421 cttgggtttgagtgccatctttctcctctcatttcccctttcttatatccctctctctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 403 cttgggtttgagtgccatctttctcctctcatttcccctttcttatatccctctctctac 344

                                                                       
Query: 481 tgctttcttcttta-cattctcacttactttcagattctgggtacaactgataatttaaa 539
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgcttttttctttaacattctcacttactttcagattctgggtacaactgataatttaaa 284

                                                                       
Query: 540 cttcacgagttcattacttaagataattcagtattatctatatggcattcctaccatgga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttcacgagttcattacttaagataattcagtattatctatatggcattcctaccatgga 224

                                  
Query: 600 tctttatttttcttggctaagac 622
           |||||||||||||||||||||||
Sbjct: 223 tctttatttttcttggctaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space:   619956
Effective search space used:   619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)