BAC Information

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BAC

Clone NameMSMg01-520G04
Chromosome4 (Build37)
Map Location 106,095,591 - 106,228,988
singlet/doubletdoublet
Overlap geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61
Upstream geneLOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneDhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520G04.T7 (MSMg01no520_g04.b1)MSMg01-520G04.TJ (MSMg01no520_g04.g1)
ACCAG591429AG591430
length762764
length of high quality
(start - end)		713 (45 - 757)610 (72 - 681)
definitionCHROMAT_FILE: MSMg01no520_g04.b1 PHD_FILE: MSMg01no520_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:25 2005CHROMAT_FILE: MSMg01no520_g04.g1 PHD_FILE: MSMg01no520_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,095,591 - 106,096,299)(106,228,625 - 106,228,988)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCACTATATTTGTACTGCACGTGCAGTCAATATTATCTTGCATTTGTGGA
ATACACTACTTTTAAAATATTTTCATTTTTAATATTTCACTTTATCCTCA
AAGCCACAAAGAGGGCAGAGCAGGTAGACTATCTCTGCCATTAAATGAAG
CACTTTTAGGGACCATGTGCCCATTTATACAAGACCCTGGAGGCACCACA
GGGCCAGGCCTCCTGTCCTCCAGCTTCATGGTTTTCTAGTACACCGAGGC
TCAGGGAAATTGCTCAGCCTCTATTGTATACTTGGTTTTAGAATTTGAGT
TAATGTTTTCTTCCTGGGGAGCAAACCCTTTGAAGATGCCTTTAGACCCA
TGACTGTCTATGTTGACCTCCTCCACTGTGGGCTCAGGAGATGCTATGGT
TTAGTACATCACCAGCGAGTGACCCCTCCCCACCCAGAACAGGAGCATGC
TTTCCTTTCTCTACTGACAGATACGCAGATGGAGTTCAGCACAAGCACGG
GAGTTTGGGAATCTTCACAACACTGTTGCCCTGCTGGTCCTGCATTCGGA
TGTCTCTTCACAGAGGAATGTGGGTAAGCTTGAGCAGACCTTCCCACATC
AGAAGCGGGAGAAGAGGGCTTCATCTTAGGAGCTGAAGCAATAGTATTTG
TTTCTCAAATGACTATTGATATTTGGGGAGTGCTTAAAAGTTGTTTTTTT
TTTTTCATTAAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTGTTACCGTCTGTATATGACAGAGAA
CAGGGAAGGAAGCTGAGGACACAGTATATCCAGGACAACTGGAGGAGGAC
TAAGGAAGCACCTGGCAGTCATGGGCATGGCTGCGTGTGCTTGTAACCGC
AGCATCAGGGGAGGAGATGGTGGACCCCAAAAGCTTGCTAGACAGACAGT
CTAACTAGAAGTGGGGACTGTCTGGTTCAGTGAGGCATCTGTCTCAAGTC
ACTAAGGTTCTGCTCTGGCCTCCACATGTGAGTGCATGGTTGGGGACACA
CTCATGTATGTAACACACAGTGAGAGGCATGTATGAATGCACATACAGGC
CTGTACACATGCATACACAGAGGCATGTATGCACACACACAGAGGCATGT
ACACACAGAGAGGCATGTATACACACACACACACGCACACGCACACACAC
GTATGCATGTACACACATGCAGTGCTGGCACACTCTTCTTCCCTGTATAG
CAAGAACTAGCACCAGCGACAGGGGGGCTTGTCATATAAAGTCTTTATGA
ATAGGCTTAAAATGGACAACTGACTGAGAGTGTGTTTGAGGCTCTTCAAG
ATGTCCTCTTTAATGTTTACAGGGCTGCAGAGGGTGTCTTCACCCAGAAA
GAGTAAGAATACCTCATCAGAAAGGGAGGAAAGACGCTGGTATGAGTGAC
TTGGTGATTGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_g04.b1 MSMg01no520_g04.b1 CHROMAT_FILE:
MSMg01no520_g04.b1 PHD_FILE: MSMg01no520_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:25 2005
         (713 letters)



>mm_chr4_106095389_106096501
          Length = 1113

 Score = 1324 bits (685), Expect = 0.0
 Identities = 703/709 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcactatatttgtactgcacgtgcagtcaatattatcttgcatttgtggaatacac 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcactatatttgcactgcacgtgcagtcaatattatcttgcatttgtggaatacac 262

                                                                       
Query: 63  tacttttaaaatattttcatttttaatatttcactttatcctcaaagccacaaagagggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacttttaaaatattttcatttttaatatttcactttatcctcaaagccacaaagagggc 322

                                                                       
Query: 123 agagcaggtagactatctctgccattaaatgaagcacttttagggaccatgtgcccattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agagcaggtagactatctctgccattaaatgaagcacttttagggaccatgtgcccattt 382

                                                                       
Query: 183 atacaagaccctggaggcaccacagggccaggcctcctgtcctccagcttcatggttttc 242
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atacaagaccctggaggcgccacagggccaggcctcctgtcctccagcttcatggttttc 442

                                                                       
Query: 243 tagtacaccgaggctcagggaaattgctcagcctctattgtatacttggttttagaattt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagtacaccgaggctcagggaaattgctcagcctctattgtatacttggttttagaattt 502

                                                                       
Query: 303 gagttaatgttttcttcctggggagcaaaccctttgaagatgcctttagacccatgactg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 gagttaatgttttcttcctggggagcaaaccctttgaagatgcctttagacccgtgactg 562

                                                                       
Query: 363 tctatgttgacctcctccactgtgggctcaggagatgctatggtttagtacatcaccagc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctatgttgacctcctccactgtgggctcaggagatgctatggtttagtacatcaccagc 622

                                                                       
Query: 423 gagtgacccctccccacccagaacaggagcatgctttcctttctctactgacagatacgc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagtgacccctccccacccagaacaggagcatgctttcctttctctactgacagatacgc 682

                                                                       
Query: 483 agatggagttcagcacaagcacgggagtttgggaatcttcacaacactgttgccctgctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agatggagttcagcacaagcacgggagtttgggaatcttcacaacactgttgccctgctg 742

                                                                       
Query: 543 gtcctgcattcggatgtctcttcacagaggaatgtgggtaagcttgagcagaccttccca 602
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 743 gtcctgcattcggatgtctcttcacagaggaatgttggtaagcttgagcagaccttccca 802

                                                                       
Query: 603 catcagaagcgggagaagagggcttcatcttaggagctgaagcaatagtatttgtttctc 662
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 803 catcagaagcgggagaagagggcttcatcttaggaactgaagcaatagtatttgtttctc 862

                                                            
Query: 663 aaatgactattgatatttggggagtgcttaaaagttgtttttttttttt 711
           ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 863 aaatgactattgatatttgaggagtgcttaaaagttgtttttttttttt 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no520_g04.g1 MSMg01no520_g04.g1 CHROMAT_FILE:
MSMg01no520_g04.g1 PHD_FILE: MSMg01no520_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:25 2005
         (610 letters)



>mm_chr4_106227979_106228988
          Length = 1010

 Score =  615 bits (318), Expect = e-180
 Identities = 360/390 (92%), Gaps = 26/390 (6%)
 Strand = Plus / Minus

                                                                        
Query: 221  tctcaagtcactaaggttctgctctggcctccacatgtgagtgcatggttggggacacac 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tctcaagtcactaaggttctgctctggcctccacatgtgagtgcatggttggggacacac 951

                                                                        
Query: 281  tcatgtatgtaacacacagtgagaggcatgtatgaatgcacatacaggcctgtacacatg 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  tcatgtatgtaacacacagtgagaggcatgtatgaatgcacatacaggcctgtacacatg 891

                                                                        
Query: 341  catacacagaggcatgtatgcacacacacagaggcatgtacacacagagaggcatgtata 400
            |||                      |||||||||||||||||||||||||||||||||||
Sbjct: 890  cat----------------------acacagaggcatgtacacacagagaggcatgtata 853

                                                                        
Query: 401  cacacacacacacgcacacgcacacacacgtatgcatgtacacacatgcagtgctggcac 460
            ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  cacacacaca----cacacgcacacacacgtatgcatgtacacacatgcagtgctggcac 797

                                                                        
Query: 461  actcttcttccctgtatagcaagaactagcaccagcgacaggggggcttgtcatataaag 520
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  actcttctttcctgtatagcaagaactagcaccagcgacaggggggcttgtcatataaag 737

                                                                        
Query: 521  tctttatgaataggcttaaaatggacaactgactgagagtgtgtttgaggctcttcaaga 580
            ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 736  tctttataaataggcttaaaatgaacaactgactgagagtgtgtttggggctcttcaaga 677

                                          
Query: 581  tgtcctctttaatgtttacagggctgcaga 610
            ||||||||||||||||||||||||||||||
Sbjct: 676  tgtcctctttaatgtttacagggctgcaga 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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