NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACAAAAGAATCTTAAATTGCTGAGAAGTACTTTAAAA
AATGTTCAAAGTTTTTAGTAATTGGGGAAATGCAAATCAAAACAACGATT
AAGTTATATCTTACACCCATCAGAATGGTAAAGATCAAAAACTCAAGAGA
TAGAACATGCTAGTGAAGATGTGAAGCAAGAGAAATATTTCTTTATTGCT
GGTGGGATACAAAATTGTGCAGCCACTTTGATAAACAAATTTAGCAGTTT
CTCAAAATACTGGGAATATTTCTACAGCAAATCCCAGCTATACCACTCTT
TGGAAAAAGGTGTTCATCTACAGCGTGTATACCCAAAGTATACTCGAATA
TCTTACATAGACACTTGCTCAACTATACTCATAGGAGATTTATTCATAAT
CGGAAGAAACTGAAAACAACCTAGATGTACCTCAACTGAAGAATGGATAA
AAAAAAATTGGTATATCTACACAGTAGAATACTATTCAGCTACTAAAAAC
CAAGACACCATGAATTTTGCAGGCAAATAGATGGGACTTAAGAATATCAT
CCTGAGTGAAGCTACCCAGTCCAAAAAGGACATGCATGGTATGTCCCCAA
CTTATAAGTGGATATTAGCTGTAAAATANGGNTGCCATGTTACACTTCAC
AGACCCAAGAAGCTAAACACAAAATGCAGGGCCCAGTGAGGAAACTTAAT
CTCATTTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCCTGTAGGTCAGGACCCCTTTGG
AAGTGCTACATATCTGATATCCTGCATATCAGATATTTAAAATAAATTCA
TAACACTAACAAAATTACAGTTATTAACCAACAACAAAAATAATTTTATG
TTTGGAATCACCACAATAGGAAGAATGTAATTAAGGGTCAATTCAATAGA
AAAGTTGAGAATGATTGTTCTATTGCATAAGAGCAGAGAAAATTGATTCA
TTCTAGCTTTCAGAGGAAAGTCAGTATTTTCAGGTTTGGTAGATTACTGG
CTGTAGCCTGATCCTAAGTAGCCTTTAATGTATTGAGGTGTCTTCCTTCT
GATTATTTAATGAAAGTGTTCAAAACTCTAAAATTTCCTCTTATAGTATT
TTTGCTCCATTTCTATATGTTTTAGTCAGGGTTCTTTAGAATCAGAGTAC
ATCTTGAATATCTCTAAATATTAAGGTAATTTGTTGGAATGATGTACAGT
CTGCAGTCCAAGTCACCCCACAAATGGGCAGCTATGAAAGGGAAATCCNA
GAATCTAGTAGTTTATCAGTCCCCATAAGGGTAACTAGTTTCCACTGATC
TTCTGTATAAGAAAGAATCCTGGAGGAAGAAGGGTACCAACAAAGGGCCT
GGGCAAGAAAAGGCCACCCCGGCCAAAAAAAAAGGGAAATCCTTCCT

Query= MSMg01no520_m13.g1 MSMg01no520_m13.g1 CHROMAT_FILE:
MSMg01no520_m13.g1 PHD_FILE: MSMg01no520_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:56 2005
         (484 letters)



>mm_chr4_67054350_67055233
          Length = 884

 Score =  874 bits (452), Expect = 0.0
 Identities = 476/484 (98%), Gaps = 1/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcctgtaggtcaggacccctttggaagtgctacatatctgatatcctgcatatcaga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 787 tcagcctgtaggtcaggacccctttggaagtgctacatatcagatatcctgcatatcaga 728

                                                                       
Query: 61  tatttaaaataaattcataacactaacaaaattacagttattaaccaacaacaaaaataa 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tattt-aaataaattcataacactaacaaaattacagttattaaccaacaacaaaaataa 669

                                                                       
Query: 121 ttttatgtttggaatcaccacaataggaagaatgtaattaagggtcaattcaatagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttttatgtttggaatcaccacaataggaagaatgtaattaagggtcaattcaatagaaaa 609

                                                                       
Query: 181 gttgagaatgattgttctattgcataagagcagagaaaattgattcattctagctttcag 240
           ||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 608 gttgagaatgaatgttctattgcataagagcagaaaaaattgattcattttagctttcag 549

                                                                       
Query: 241 aggaaagtcagtattttcaggtttggtagattactggctgtagcctgatcctaagtagcc 300
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 548 aggaaagtcagtattttcaggtttggtagatcactggatgtagcctgatcctaagtagcc 489

                                                                       
Query: 301 tttaatgtattgaggtgtcttccttctgattatttaatgaaagtgttcaaaactctaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttaatgtattgaggtgtcttccttctgattatttaatgaaagtgttcaaaactctaaaa 429

                                                                       
Query: 361 tttcctcttatagtatttttgctccatttctatatgttttagtcagggttctttagaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttcctcttatagtatttttgctccatttctatatgttttagtcagggttctttagaatc 369

                                                                       
Query: 421 agagtacatcttgaatatctctaaatattaaggtaatttgttggaatgatgtacagtctg 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agagaacatcttgaatatctctaaatattaaggtaatttgttggaatgatgtacagtctg 309

               
Query: 481 cagt 484
           ||||
Sbjct: 308 cagt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)