CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAAATTGTTCCTGGTTATTGAACTGCTTAGAAATCTTTATAA
GATTTCAGAGTTATAGGCTTCCTTTACCTAAAATTTAATATAAAAATGAA
TATTAGGTAGTGAAAATAATGCTCTACAATAGATTGTAAAATTTTTAAGA
TGAATTGGGTACATCCACAAGCATGTATCATGGTACATCTAATATTAATA
GGAATAAACAAACAAACAAAAACCTCCTAATAGCTTAGAAATTAAATTAA
CCTAAAATTGTCTAAATTTATGCCCTTGTTGCATTGTAAAGTCTCTTAAG
AAAATTTTGGAGACATAGTTTTTCTACTGGCCTCTACCTTATAAAATTTT
AATGCCATAGAGAAACAAATATATATTTCACATGTGTGTGTCTCATATAT
AATATATGATATATAGAGTGAAAGAACTATATATATATATATATATATAT
GTACACATACATACATATATGTATGTATATAGATATATACCATATATATA
TATCTAATTATTAAAAATAATAAGATAATATTTTTCTGTTTGAAAATAAT
TTTTGCCTCCTTGGTTCCCGTGGCTAAAGAGCAAGGATACACTTATGAGA
ATTTATATCCCAAGTCTGCTTGGGTCAGAGAATTTTCAGCATGAGAATCC
AGAAGAGAATGGGGTCTGGAAAGACTTGACAAAAACTTACAAAAAATACC
ATN

NCCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTAAGAGGGATATTTGGTTCTCTGAAGTCTAACTTCTTAAGATCTTTGT
ACATAGAGGATATTAGCTTTCTATTGGATGTTGGATTGGAAAGATCTTTT
CCCATCTGTTGGTTGCCATTTTGTCCTATTGACAGTGTCCTTTGCCTTAC
AGAATCTTTGCAATTTTACAAGGTTTCATTTGTCCATTTTTGATCTTACA
ACATAAAATTAACTCAAATAAATCAGTAGTCTTCCTTTATTAAAAAAATA
AACAGGCTGAGAAAAAATAGGGAAAAAACACCCTTCACAATAGTCACAAG
TAATATAAAATACCTTGGTGTGCCACTGACCAAGCATGTTAAAGATCAGT
ATGACAAGAACTTTAAGTTCCTGAAGAAAGAAATTGAAGATCTCAGAAGG
TAGAAAGAACTCCCAAATTCATGGATTGGTAGGGTTAATATATAAATATT
GTCTTCTTGCTGAAAGCAATCTAAAGATTCAATGGAATCCTCATCAAAAT
TCCAACTCAATTCCTCATAGAAAGAGCTAATTGCAAATTCATTTGGAAAA
ACTAAAATCCCAGGAGACAGAAAAATTCTCAATAATAAAAGAACTTCTGG
CGGAATCACTTTCCCTGACATCAAGCTGTATTACATTAATAGTGAT

Query= MSMg01no521_b12.b1 MSMg01no521_b12.b1 CHROMAT_FILE:
MSMg01no521_b12.b1 PHD_FILE: MSMg01no521_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:19 2005
         (537 letters)



>mm_chr4_17157998_17158934
          Length = 937

 Score =  810 bits (419), Expect = 0.0
 Identities = 485/521 (93%), Gaps = 27/521 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataatgctctacaatagattgtaaaatttttaagatgaattgggtacatccacaagc 60
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 515 aaaataatgctctacaatagattgtaaaatttttaaggtgacttgggtacatccacaagc 456

                                                                       
Query: 61  atgtatcatggtacatctaatattaataggaat----aaacaaacaaacaaaaacctcct 116
           |||||||||||||||||||||||||||||||||    ||||||||||||||||||  |||
Sbjct: 455 atgtatcatggtacatctaatattaataggaataaacaaacaaacaaacaaaaac--cct 398

                                                                       
Query: 117 aatagcttagaaattaaattaacctaaaattgtctaaatttatgcccttgttgcattgta 176
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aatagcttagaaataaaattaacctaaaattgtctaaatttatgcccttgttgcattgta 338

                                                                       
Query: 177 aagtctcttaagaaaattttggagacatagtttttctactggcctctaccttataaaatt 236
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 337 aagtctcttaagaaaattttggagacatagtttttctactggcctccaccttataaaatt 278

                                                                       
Query: 237 ttaatgccatagagaaacaaatatatatttcacatgtgtgtgtctcatatataatatatg 296
           |||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||
Sbjct: 277 ttaatgccatagagaaacaaatatatatttcatatgtgtgt--ctcaaatataatatatg 220

                                                                       
Query: 297 atatatagagtgaaagaac----------------tatatatatatatatatatatatgt 340
           |||||||||||||||||||                ||||||||||||||||||||||| |
Sbjct: 219 atatatagagtgaaagaaccatatatatatatatatatatatatatatatatatatatat 160

                                                                       
Query: 341 acacatacatacatatatgtatgtatatagatatataccatatatatatatctaattatt 400
           ||||| ||||||||||||||||||||||||||||||||| |||||||||  |||||||||
Sbjct: 159 acacacacatacatatatgtatgtatatagatatataccgtatatatat--ctaattatt 102

                                                                       
Query: 401 aaaaa-taataagataatatttttctgtttgaaaataatttttgcctccttggttcccgt 459
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aaaaaataataagataatatttttctgtttgaaaataatttttgcctccttggttcccgt 42

                                                    
Query: 460 ggctaaagagcaaggatacacttatgagaatttatatccca 500
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ggctaaagagcaaggatacacttatgagaatttatatccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)