Query= MSMg01no521_e01.b1 MSMg01no521_e01.b1 CHROMAT_FILE:
MSMg01no521_e01.b1 PHD_FILE: MSMg01no521_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:32 2005
(670 letters)
>mm_chr8_49832716_49833785
Length = 1070
Score = 402 bits (208), Expect = e-116
Identities = 231/248 (93%), Gaps = 15/248 (6%)
Strand = Plus / Minus
Query: 5 gaattccttccttgaccactgttctagaaagagtagtttatgttcccttgccgtgtatgc 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 gaattccttccttgaccactgttctagaaagagtagtttatgttcccttaccgtgtatgc 319
Query: 65 actgagctcattctattgctagattacatccttttctacatctccactgagaaggcactc 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 actgagctcattctattgctagattacatcctcttctacatctccactgagaaggcactc 259
Query: 125 agtggtccccagtgacagtgaccactgtagatgttctcttcgttgtctaatttttcttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtggtccccagtgacagtgaccactgtagatgttctcttcgttgtctaatttttcttcc 199
Query: 185 tcctctcctctttctcctcc---------------tcctcttcctccttctgctcctctt 229
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 198 tcctctcctctttctcctccttttcctcctcctcttcctcttcctccttctgctcctctt 139
Query: 230 cctcatgc 237
||||||||
Sbjct: 138 cctcatgc 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_e01.g1 MSMg01no521_e01.g1 CHROMAT_FILE:
MSMg01no521_e01.g1 PHD_FILE: MSMg01no521_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:32 2005
(648 letters)
>mm_chr4_10051337_10052385
Length = 1049
Score = 1224 bits (633), Expect = 0.0
Identities = 645/649 (99%), Gaps = 1/649 (0%)
Strand = Plus / Plus
Query: 1 cctcagcacttacaatgcttaggttttccaaagattctgatgcttaaatgaaagggagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcagcacttacaatgcttaggttttccaaagattctgatgcttaaatgaaagggagag 260
Query: 61 ggagccagcaggccagccagccagccaggacacatgccaaggagccagccaggatgaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagccagcaggccagccagccagccaggacacatgccaaggagccagccaggatgaggg 320
Query: 121 gatcacagctgctcacttgtgcctgcctattgcttcagatgggaagggaaaaatcttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcacagctgctcacttgtgcctgcctattgcttcagatgggaagggaaaaatcttttg 380
Query: 181 aatctattactgaggaaaaaaa-tgggccttttggacactgactcagaactcttggcctt 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctattactgaggaaaaaaaatgggccttttggacactgactcagaactcttggcctt 440
Query: 240 gtttttgttgaaacgatatattgttttacaagatctgagctccaagctcacattcctgct 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gtttttgttgaaacgatatattgttttacaagatctgagctccaagcccacattcctgct 500
Query: 300 cacatcactgttattattccatggtttccacatcatctctgtggctctatgcaaaatata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatcactgttattattccatggtttccacatcatctctgtggctctatgcaaaatata 560
Query: 360 tatgaaaaaaactagataaattatgctcacgtgtatgcacatttgtggcagcagagaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgaaaaaaactagataaattatgctcacgtgtatgcacatttgtggcagcagagaatg 620
Query: 420 agggatgtagcagtgggaggatatcacaggggagcagtaagggagcacccaggccactca 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggatgtagcagtgggaggatgtcacaggggagcagtaagggagcacccaggccactca 680
Query: 480 agttttcttctgagtatggccggcaaagcagatgtagtcaacgcatcatgcttacaagta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttttcttctgagtatggccggcaaagcagatgtagtcaacgcatcatgcttacaagta 740
Query: 540 cagctgtcttgtgcagcggaagcagacctttctgatgggatggatggagatcagttgtgg 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagctggcttgtgcagcggaagcagacctttctgatgggatggatggagatcagttgtgg 800
Query: 600 attgttggagtaaagtctaaaaggaaatcacaaggcagtgctatctcga 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgttggagtaaagtctaaaaggaaatcacaaggcagtgctatctcga 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
