TTTTAATATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCAAGGCCATCCTGGTCTACAGAGTGAGTTCCAGGACAG
TCAGGGAGGGCTACCCAGAGAAACTGTGTCTCGAAAAACTAAAGTAAATG
CATAAAATAAAAAGAATATTAAAGCCTGCATCCAAGCTTTAATTTCTGTT
GTCAATCATGTTGACAATAACATACAGCATGAGAGGAGTTCTAATCCAGT
GACGCGCCTTTCCCCTCAAATGGACATTTCTAAGTGGTACCACAAATTAG
AACAAAAAGCCTCCACCCTAGTTAATGTTAGTTGTACAGCACAACTGTCA
GAGAACAGGAACACTGTTATATTTCCCTTTTCCCGGTAGTGCTAGCATAG
GACCTTGCACATGCTGGACAACCGTATCACCACCAGGCTACACACACAGC
CACACAGCTCAACTCAGTTCTGCGTGTCCTCCTCAACTATCAACTGTCAC
TGAGACTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACGTTGTAG
CTGTCTTCAGACACTCCAGAAAAGGGTGCCAGATCTCATTATAGATGGTT
GTGAGCCACCATGTGGTAGTTGGGATTTGAACTCAGGACCTTCAGAAGAG
CAGTCAGTGTTCTTAACCACTGAGCCATCTCTCCAGCCCCTGCGCTGAGA
CTCTTATCTCTATGAGATCTAATCAACTACCTAGAAGAGATGGCTACTAA
TG

NTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATTAGTGGGAAAC
TGTTTCAAAAGTAAGGTAAAATTGAGGAAGAAGTTGGACAGGTCTTAGTC
CCTAGGTTTGCCTAGAGCTCTCTATGTAACAGTGACTTCAACTCTTGATC
CCCCTGCCTCAGCCTGGAAAGTGCTATGATTATAGGCCTAAGCCACCAAA
GCTACCTCATCTTTACTTTATACATTTCTGTATGGTTTGTATTTTTACAG
CAAGGATGCATAGCAGAGATAGCCTCCCCACCCACCCTACCTCTGTATGT
ATTGGGGGAGGGGTGTCTGTGCATTTTGAGGCCAGAGGATGTCCTCAGGT
GTCATTCCTCAGGAGCCATCTTTTTTTTTCTTTTGGTGCAGAGTCTCTCA
CTGGCCTGATACTTGAAAAGTAGCCTAAGCTTGTTGGCCAGAGTTTCCAG
GGACCTGTCTTTCTCTGCTTGCTCAGAGCTAGGATTACAAACACTCGTCA
CCATGCATGGAATTTTTTCCTGGGTACTGAAAATCAAATTCAAGCCCTTG
CACTTACAAGATAAGCACATTACTAACTACCTAATCCCAGCCCTATGTTG
GGTTATTTATTTACTTACTTGTTTAATTTGTATGAGTGTAGCTTAAATTT
TCCAAACCCTATTTTAAATGATGGTTCTTAAATATTTTAGCCTCCATT

Query= MSMg01no522_h14.b1 MSMg01no522_h14.b1 CHROMAT_FILE:
MSMg01no522_h14.b1 PHD_FILE: MSMg01no522_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:05 2005
         (645 letters)



>mm_chr4_122524026_122525069
          Length = 1044

 Score = 1170 bits (605), Expect = 0.0
 Identities = 633/647 (97%), Gaps = 10/647 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaaggccatcctggtctacagagtgagttccaggacagtcagggagggctaccca 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattcaaggccagcctggtctacagagtgagttccaggacagtcagggagggctaccca 678

                                                                       
Query: 68  gagaaactgtgtctcgaaaaactaaagtaaatgcataaaataaaaagaatattaaagcct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagaaactgtgtctcgaaaaactaaagtaaatgcataaaataaaaagaatattaaagcct 618

                                                                       
Query: 128 gcatccaagctttaatttctgttgtcaatcatgttgacaataacatacagcatgagagga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcatccaagctttaatttctgttgtcaatcatgttgacaataacatacagcatgagagga 558

                                                                       
Query: 188 gttctaatccagtgacgcgcctttcccctcaaatggacatttctaagtggtaccacaaat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gttctaatccagtgacgcgcctttcccctcaaatggacatttctaagtggtaccacaaat 498

                                                                       
Query: 248 tagaacaaaaagcctccaccctagttaatgttagttgtacagcacaactgtcagagaaca 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagaacaaaaagcctccaccctagttaatgttagttgtacagcacaactgtcagagaaca 438

                                                                       
Query: 308 ggaacactgttatatttcccttttcccggtagtgctagcataggaccttgcacatgctgg 367
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggaacactgttatgtttcccttttcccggtagtgctagcataggaccttgcacatgctgg 378

                                                                       
Query: 368 acaaccgtatcaccaccaggctacacacacagccacacagctcaactcagttctgcgtgt 427
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaaccgtatcaccatcaggctacacacacagccacacagctcaactcagttctgcgtgt 318

                                                                       
Query: 428 cctcctcaactatca------actgtcactgagac---tttttttttttaagatttattt 478
           |||||| ||||||||      ||||||||||||||   ||||||||||||||||||||||
Sbjct: 317 cctcct-aactatcaactgtcactgtcactgagacttttttttttttttaagatttattt 259

                                                                       
Query: 479 attatatgtaagtacgttgtagctgtcttcagacactccagaaaagggtgccagatctca 538
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attatatgtaagtatgttgtagctgtcttcagacactccagaaaagggtgccagatctca 199

                                                                       
Query: 539 ttatagatggttgtgagccaccatgtggtagttgggatttgaactcaggaccttcagaag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttatagatggttgtgagccaccatgtggtagttgggatttgaactcaggaccttcagaag 139

                                                          
Query: 599 agcagtcagtgttcttaaccactgagccatctctccagcccctgcgc 645
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 agcagtcagtgttcttaaccactgagccatctctccagcccctgcgc 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)