NNNNNCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTTTGCCAAACTTAGAATGTTCTCTGTATGCATTCTAA
AGGAAATGGAAGCCACATGTTTCTGATTCATTTACATGTAATCCATCAAA
ATATTATTTTGTAAGAGATACTTAATGTCTAAGGAACCTGCCAAGCTTTC
TTGTAAACACATTTCCCTAAAGGACCAGCTGCACCGAGGCAGATGTATAA
GAAGTTACTCTTGAAAAATGGAACTAGTTTCAAAGTCTCAAGTTCAGTTT
AAACTTCCCCAGAACAGCTTAACATGGGAGGACTAGCATAGACTCTAGAG
TTAGACAGGCTCACATTTTTAATCTGCTTTACCTTGTAGTAAAGTTCATA
AAAATATATGTCCATATATGAATGCATTTGTATAAAACTAACACTAGAAA
TGCAGTTATGATAAAGTAAAATCTCACTGTTTTTATAGATACAGTTACTA
AGCTTACACAGGACAGCATTTTCTTTTTGTGAGAAGTTAAGTTATTGAGG
CAAAACCCCATCAGTAAGAATCTCTGGCATGAAAAACAAGTTTTGCAAAA
GAATTTCCCTTCAATTTTCCATGGAATCTGCTTTCTAGAATCTGTCTGCA
CACAGACTCTCAAATAAGGTCCCTGCTCCTCTAACTCCCTCAATTCTCAC
GTAACTATCATGCCTATTATTTGTCTCTCTCTCTTTGTTAGAACACATAT
TTC

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGCATAAGAATTAGG
ACCAGTAACTGACAAGTGGCACTTTAGGAAACTAAAAAGCCTGAGTAGAT
AAAATCAACTAGTTAAAGGTGAAGTTCTCATAATAGGAGAACATCTTTGC
CAGCTGTATCTGACAAAAGTTTAATATCCAGAATATACAAAGATCTCAAA
AATCGGAGACAAAACCAAACAATCAAAAAACAAAACAAGCAAAAATATAA
ATAAATAAAATAAAAATAAAAAACCAAACCAAACCAAAACAAAACAAAAC
AAAAAAAACCAAAATTACCCATTTAAAAAATAGCCCTGCCCTTCCGCTCG
ACTCGAGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACA
CCCGAAAGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGGTG
AGTGGATCACAGTGCCTGCCCCAATCCAATCGCGCGGAACTTGAGACTGC
GGTACATAGGGAAGCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCT
TCCACTCCACTTGAGCCCCGGGCTACCTTGCCAGCTGAGTCGCCTGACAC
CCGCAAGGGCCCACACAGGATTCCACACGTGATCCTAAGACCTCTAGTGA
GTGGAACACAACTTCTGCCAGGAGTCTGGTTCGAACAACAGATAN

Query= MSMg01no522_h15.b1 MSMg01no522_h15.b1 CHROMAT_FILE:
MSMg01no522_h15.b1 PHD_FILE: MSMg01no522_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:05 2005
         (605 letters)



>mm_chr4_96945318_96946322
          Length = 1005

 Score = 1100 bits (569), Expect = 0.0
 Identities = 593/601 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttgccaaacttagaatgttctctgtatgcattctaaaggaaatggaagcca 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttgccaaacttaaaatgttctctgtatgcattctaaaggaaatggaagcca 264

                                                                       
Query: 65  catgtttctgattcatttacatgtaatccatcaaaatattattttgtaagagatacttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgtttctgattcatttacatgtaatccatcaaaatattattttgtaagagatacttaa 324

                                                                       
Query: 125 tgtctaaggaacctgccaagctttcttgtaaacacatttccctaaaggaccagctgcacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctaaggaacctgccaagctttcttgtaaacacatttccctaaaggaccagctgcacc 384

                                                                       
Query: 185 gaggcagatgtataagaagttactcttgaaaaatggaactagtttcaaagtctcaagttc 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggcagatgtataagaagttattcttgaaaaatggaactagtttcaaagtctcaagttc 444

                                                                       
Query: 245 agtttaaacttccccagaacagcttaacatgggaggactagcatagactctagagttaga 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 agtttaaacttccccagaacagcttagcatgggaggactagcatagactctagagttaga 504

                                                                       
Query: 305 caggctcacatttttaatctgctttaccttgtagtaaagttcataaaaatatatgtccat 364
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 505 caggctcacatttttaatctgctttaccttgtactaaaattcataaaaatatatgtccat 564

                                                                       
Query: 365 atatgaatgcatttgtataaaactaacactagaaatgcagttatgataaagtaaaatctc 424
           ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatggacgcatttgtacaaaactaacactagaaatgcagttatgataaagtaaaatctc 624

                                                                       
Query: 425 actgtttttatagatacagttactaagcttacacaggacagcattttctttttgtgagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgtttttatagatacagttactaagcttacacaggacagcattttctttttgtgagaa 684

                                                                       
Query: 485 gttaagttattgaggcaaaaccccatcagtaagaatctctggcatgaaaaacaagttttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttaagttattgaggcaaaaccccatcagtaagaatctctggcatgaaaaacaagttttg 744

                                                                       
Query: 545 caaaagaatttcccttcaattttccatggaatctgctttctagaatctgtctgcacacag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaaagaatttcccttcaattttccatggaatctgctttctagaatctgtctgcacacag 804

            
Query: 605 a 605
           |
Sbjct: 805 a 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)