Query= MSMg01no522_n02.b1 MSMg01no522_n02.b1 CHROMAT_FILE:
MSMg01no522_n02.b1 PHD_FILE: MSMg01no522_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:31 2005
(669 letters)
>mm_chr4_123027059_123028127
Length = 1069
Score = 1288 bits (666), Expect = 0.0
Identities = 666/666 (100%)
Strand = Plus / Plus
Query: 4 ggaattcattcctcagtttatggtaggttgatcgaccatttaaataaatagaaaaaaaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattcctcagtttatggtaggttgatcgaccatttaaataaatagaaaaaaaaa 263
Query: 64 aaaagcagatcagcaaatctgtaattcacagtgccaccaaggagtccccctcaccagggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaagcagatcagcaaatctgtaattcacagtgccaccaaggagtccccctcaccagggc 323
Query: 124 ctggggcctggtgagcacaggagtcactgagggctgggttggacagttagttacagatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggggcctggtgagcacaggagtcactgagggctgggttggacagttagttacagatca 383
Query: 184 gtttaaaaccccaatgttctgaagtttcctttacccctgaatcctagcagctatgcgccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttaaaaccccaatgttctgaagtttcctttacccctgaatcctagcagctatgcgccc 443
Query: 244 tttaacacccagtattgagacattatgttaagacagtattgcaatgaactctttgctata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttaacacccagtattgagacattatgttaagacagtattgcaatgaactctttgctata 503
Query: 304 tcatgtgcaaaagctatctagatgaggttctgtctcttcagctaaaattacacaacagta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcatgtgcaaaagctatctagatgaggttctgtctcttcagctaaaattacacaacagta 563
Query: 364 aaacaatggaaatgcaatcttaagtgtccgctccttaattctcgctaactgaggtgtctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaacaatggaaatgcaatcttaagtgtccgctccttaattctcgctaactgaggtgtctg 623
Query: 424 tgatttagaaagaagagttccttaaacacttcggaattcttatttttttaatataattta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgatttagaaagaagagttccttaaacacttcggaattcttatttttttaatataattta 683
Query: 484 tcttgctgatatagcaagtcaagtttataaagaagatgcatttaggaataatcctaaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcttgctgatatagcaagtcaagtttataaagaagatgcatttaggaataatcctaaaag 743
Query: 544 ataaagcaggtttataaccctgcaccacatgaaaccctatttagaggcttttctttttaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ataaagcaggtttataaccctgcaccacatgaaaccctatttagaggcttttctttttaa 803
Query: 604 tacacatttgcgtcttgaccttttgttttcctcaaatatttcatctctgggccctatctg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tacacatttgcgtcttgaccttttgttttcctcaaatatttcatctctgggccctatctg 863
Query: 664 ttacag 669
||||||
Sbjct: 864 ttacag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_n02.g1 MSMg01no522_n02.g1 CHROMAT_FILE:
MSMg01no522_n02.g1 PHD_FILE: MSMg01no522_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:32 2005
(644 letters)
>mm_chr4_123208421_123209470
Length = 1050
Score = 1195 bits (618), Expect = 0.0
Identities = 639/648 (98%), Gaps = 6/648 (0%)
Strand = Plus / Minus
Query: 1 ttttcttttatgtctttagttatgaaaattccaaggactgggaggtgtatgcagtccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttttcttttatgtctttagttatgaaaattccaaggactgggaggtgtatgcagtccttg 789
Query: 61 tacatatagtc----acagtgacacagaagttaatattttgttctttattcttctgaggc 116
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tacatatagtcgcttacagtgacacagaagttaatattttgttctttattcttctgaggc 729
Query: 117 agttttcctcttctttttcttaaaggaagtaaaacatttcagatacgttgcttcttgctc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agttttcctcttctttttcttaaaggaagtaaaacatttcagatacgttgcttcttgctc 669
Query: 177 tttctgctctgtagtaaatgtccttttgaagttggcacatatcatttcttatgcaatttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttctgctctgtagtaaatgtccttttgaagttggcacatatcatttcttatgcaatttt 609
Query: 237 gtgcattaacagcagatttggaatcataactatgtgctagcatttgtatgttttatattt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgcattaacagcagatttggaatcataactatgtgctagcatttgtatgttttatattt 549
Query: 297 ccaacgtgcccactccagccttgttcatgtaaggcccatgctctactcccaagctaaggc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccaacgtgcccactccagccttgttcatgtaaggcccatgctctactcccaagctaaggc 489
Query: 357 ctgtgctctactcctaacccagccctaaggtttgtggggtttgttgtgatggcgaaaagt 416
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 488 ctgtgctctattcctaacccagccctaaggtttgtggggtttgtcgtgatggcgaagagt 429
Query: 417 agtgtggcttgttcatcttggcgtgtatagagtgtgatgtgaatggtacacttcacagct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtgtggcttgttcatcttggcgtgtatagagtgtgatgtgaatggtacacttcacagct 369
Query: 477 gtgccacacttccttccttaattaactataagggctttgttgccttcacttgtgaataaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtgccacacttccttccttaattaactataagggctttgttgccttcacttgtgaataaa 309
Query: 537 gtgccatttttgcagtgaacatctgtgtattgtgaccttgccattgaagaaagaggtttg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgccatttttgcagtgaacatctgtgtattgtgaccttgccattgaagaaagaggtttg 249
Query: 597 gggttagacacctggtctggaatccttcccc-ccccccccc-cccccc 642
||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 248 gggttagacacctggtctggaatccttccccacccccccccacccccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1050
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1040
Effective search space: 659360
Effective search space used: 659360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
