Query= MSMg01no523_d20.b1 MSMg01no523_d20.b1 CHROMAT_FILE:
MSMg01no523_d20.b1 PHD_FILE: MSMg01no523_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:05 2005
(421 letters)
>mm_chr4_12212566_12213383
Length = 818
Score = 700 bits (362), Expect = 0.0
Identities = 408/430 (94%), Gaps = 12/430 (2%)
Strand = Plus / Minus
Query: 1 gacccaaaggaaagctaatttgattcttttccttcctctgagaaaggaccaaataccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gacccaaaggaaagctaatttgattcttttccttcctctgagaaaggaccaaataccatg 447
Query: 61 tgcatgtcaatatgaaacgtgtactttttatcaaatgtaaagatcatatacttagttaaa 120
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 446 tgcatgtcaatatgaaacatatactttttagcaaatgtaaagatcatatacttagttaaa 387
Query: 121 atttcatatacatcaaccttacttctctataccagtttgatttaaattctttgaatgtgt 180
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 386 atttcatatacatcaaccttacttctctatactagtttgttttaaattctttgaatgtgt 327
Query: 181 tccactttgtgggggggattatttaaacagagcaatgaaaattagaggtgtgattttaaa 240
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 326 tccactttg---gggggattatttaaacagaacaatgaaaattagaggtctgattttaaa 270
Query: 241 cttgtacaaagatgttcacatccttgtcttcagtccctagaactggtctttctgttagag 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 cttgtacaaagatgttcacatccttgtcttcagtccctggaactggtctttctgttagag 210
Query: 301 ctcaaggaa---------gaaatcaccaaagtgttgctgtattccacattgagagggcca 351
||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 209 ctcaaggaactaaaggaagaaatcaccaaagtgttgctgtattacacattgagagggcca 150
Query: 352 gactacaaagagacatttgtaaagatggtccaaggacttcactggaggacagggaggaga 411
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 149 gactacaaagagacatttgtaaagatggtccaaggacttctctggaggacagggaggaga 90
Query: 412 agtcctttag 421
||||||||||
Sbjct: 89 agtcctttag 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 818
Length adjustment: 9
Effective length of query: 412
Effective length of database: 809
Effective search space: 333308
Effective search space used: 333308
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_d20.g1 MSMg01no523_d20.g1 CHROMAT_FILE:
MSMg01no523_d20.g1 PHD_FILE: MSMg01no523_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:05 2005
(350 letters)
>mm_chr4_12022888_12023637
Length = 750
Score = 656 bits (339), Expect = 0.0
Identities = 348/351 (99%), Gaps = 2/351 (0%)
Strand = Plus / Plus
Query: 1 attcggttcattgatgttataaattcagtcttgtaaaaagtggaagttatatttgtggaa 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attcggttcattgatgttataaattcagtcttgtgaaaagtggaagttatatttgtggaa 260
Query: 61 ggtgaatttatctttgattttattttaatca-ctcagaccatataaagaaatgaaggcta 119
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 261 ggtgaatttatctttgattttattttaa-caactcagaccatataaagaaatgaaggcta 319
Query: 120 actgattaatcaggtttggcacttttattgctacttgcctgtagaactgtttgtgaagac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgattaatcaggtttggcacttttattgctacttgcctgtagaactgtttgtgaagac 379
Query: 180 attgtgccagtgtctcctataaactaaatagtccagaaaatgaacttactgtgaaataaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attgtgccagtgtctcctataaactaaatagtccagaaaatgaacttactgtgaaataaa 439
Query: 240 atttacttatgtgaagccttaggaaattctcaatatttgtgttcacaactttgaaaactt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttacttatgtgaagccttaggaaattctcaatatttgtgttcacaactttgaaaactt 499
Query: 300 ttgtaaaaataaaattgctcttgaaatacttactaacttgtatttgtgtaa 350
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgtaaaaataaaattgctcttgaaatacttactaacttgtatttgtgtaa 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
