BAC Information

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BAC

Clone NameMSMg01-523L03
Chromosome4 (Build37)
Map Location 142,598,478 - 142,599,064
singlet/doubletsinglet
Overlap gene6330411D24Rik
Upstream geneTmem51, 9030409G11Rik, EG665983, LOC546484
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L03.T7 (MSMg01no523_l03.b1)MSMg01-523L03.TJ (MSMg01no523_l03.g1)
ACCAG593951AG593952
length744742
length of high quality
(start - end)
618 (74 - 691)589 (79 - 667)
definitionCHROMAT_FILE: MSMg01no523_l03.b1 PHD_FILE: MSMg01no523_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:41 2005CHROMAT_FILE: MSMg01no523_l03.g1 PHD_FILE: MSMg01no523_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTATTGTACCGAATGGAGCACTGGGGGTGGGCCTTGGGGTT
GTAGAGTCTGGCTTTTCTTCATGTCTGCTATCTGCTTCCTTTTCTACCAA
GACAAGGGAAGGCAAGGCACCCTGGCTGCTGACTCTTGCAGCTACCTGTC
ACCATGCCTTTTCCACTATGATAGACCACACCCTCAAACTGTGACCCCAA
ATAAACTCTCCCTTCCATAAGCTGCTTCTTTTTAAGTGTTTTTTTTTCAT
AGACCTGGGAAAGTGTCTGGTACATAACCCCAGCCCCAAACTAGGAGTGT
GACTAAGTACACCCTCCTACTGTTCTCTGTCTCCAACGCCAAACCCCAGT
GCTGAGCCAGTGTTTAGAACGTGGGTCTGAGAATCATCATTTAAGCAGTG
AGAATTGTCTACTGTGGGCCAGGAATTGGTCTGGTGTATAGACTTTCCCC
AGGATGAACATCAGGTATAAAATCAGAAGAGGACAAGATGTAGGAGCAAA
GCCTGGAGTCAGAACCCCTCCCATGGGTTTGTTTTACAAGCTGCACCCTC
ACACTCTAGCATTTAGCTATGGGCACATGTGTGAGATATGTCTATCTGGG
ACACTCATTTGGAGGCTGTGGTGGTTAGAAGAACATGTCTCCCATAATTC
TCAGGTGTTCGAATACTTGGTCCCTAGTTGGTGGCTACTTTGGG
NCCTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACACTCCTGTGTTTGTAAAGCA
AGCACCTTACCAATTGAGCTACTTCCCTTCCACAGATTCAGGCTGATTGG
CAGAGTGACGTCAGCTGAGACAGACACACATGCTGAGGCAAGACCTGAGG
AGGACAAGTGATGTTTGGAGGGAGTAGAGAAAGGACTTGTTGGACAGGAA
GGCTACTGAGCTTAGATTCCTTGCATAGCTAAATGCTTGTTAGTCTCTCA
TCTTTGCTGATCTTCACTTCACTGAGAGGAACAGCCAAGAGAACTTTTCC
TGGTGTCCTTGTTGACCCTGATCCCTCCTGCTGACTCAAGCTGAGGCTGA
GGCCTGGCTGTCTCTGCTAGATTGTGCCACTACAGCAGATTTGTGTTTGC
TCTCCCAGCTCTACCAAACCAGACTGTGGTAAAGTGTTTGTGTATGGACT
GAGCAACCGCTGCTAACCTGTGAACTGAACTGCTGATTTCCTGACAACAC
AGACGAGAGTTGCTCCAAAGAACCTTTCTAAACAGGCCCACTTCCCCTGT
ATCTTTTCTTTTCCACTACCTCTGGTGGGTGGTGGACTAAGGGGGAGGTT
AAAGTGTTTAAGAGCCATCATTAAATAAGTTTTGAAAAATTAAAGTTATG
AGGACACTCCTTACATATCTGACAGCGGTGGGCCAATGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l03.b1 MSMg01no523_l03.b1 CHROMAT_FILE:
MSMg01no523_l03.b1 PHD_FILE: MSMg01no523_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:41 2005
         (618 letters)



>mm_chr4_142598047_142599064
          Length = 1018

 Score = 1019 bits (527), Expect = 0.0
 Identities = 571/591 (96%), Gaps = 13/591 (2%)
 Strand = Plus / Minus

                                                                        
Query: 37   ggcttttcttcatgtctgctatctgcttccttttctaccaagacaagggaaggcaaggca 96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ggcttttcttcatgtctgctatctgcttccttttctaccaagacaagggaaggcaaggca 959

                                                                        
Query: 97   ccctggctgctgactcttgcagctacctgtcaccatgccttttccactatgatagaccac 156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  ccctggctgctgactcttgcagctacctgtcaccatgccttttccactatgatagaccac 899

                                                                        
Query: 157  accctcaaactgtgaccccaaataaactctcccttccataagctgcttctttttaagtg- 215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 898  accctcaaactgtgaccccaaataaactctcccttccataagctgcttctttttaagtgt 839

                                                                        
Query: 216  ----tttttttttcatag-acctgggaaagtgtctggtacataaccccagccccaaacta 270
                ||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 838  tttttttttttttcacagca-ctgggaaagtgtctggtacataaccccagccccaaacta 780

                                                                        
Query: 271  ggagtgtgactaagtacaccctcctactgttctctgtctccaacgccaaaccccagtgct 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  ggagtgtgactaagtacaccctcctactgttctctgtctccaacgccaaaccccagtgct 720

                                                                        
Query: 331  gagccagtgtttagaacgtgggtctgagaatcatcatttaagcagtgagaattgtctact 390
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 719  gagccagtgtttagaacgtgggtctgagaatcatcatttaagcagtgagaattgtccact 660

                                                                        
Query: 391  gtgggccaggaattggtctggtgtatagactttccccaggatgaacatcaggtataaaat 450
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 659  gtgggccaggaattggtctggtgtatagactttccccaggacgaacatcaggtataaaat 600

                                                                        
Query: 451  cagaagaggacaagatgtaggagcaaagcctggagtcagaacccctcccatgggtttgtt 510
            || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 599  caaaagaggacaagatgtagaagcaaagcctggggtcagaacccctcccatgggtttgtt 540

                                                                        
Query: 511  ttacaagctgcaccc---tcacactctagcatttagctatgggcacatgtgtgagatatg 567
            |||||||||||||||   |   ||||||||||| ||||||||||||||||||||||||||
Sbjct: 539  ttacaagctgcacccagtt---actctagcattgagctatgggcacatgtgtgagatatg 483

                                                               
Query: 568  tctatctgggacactcatttggaggctgtggtggttagaagaacatgtctc 618
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  tctatctgggacactcatttggaggctgtggtggttagaagaacatgtctc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)