BAC Information

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BAC

Clone NameMSMg01-523L17
Chromosome4 (Build37)
Map Location 16,725,855 - 16,873,791
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L17.T7 (MSMg01no523_l17.b1)MSMg01-523L17.TJ (MSMg01no523_l17.g1)
ACCAG593979AG593980
length761762
length of high quality
(start - end)		471 (44 - 514)477 (73 - 549)
definitionCHROMAT_FILE: MSMg01no523_l17.b1 PHD_FILE: MSMg01no523_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:44 2005CHROMAT_FILE: MSMg01no523_l17.g1 PHD_FILE: MSMg01no523_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,873,324 - 16,873,791)(16,725,855 - 16,726,324)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCACTATATAAATGAAGCCAGTATATGAAATACTTGACATGAAAT
AAAAATGTGATGTATATTATTACATATATGAGACAATATCTTCAGGCTCT
GAGAGCCACAGTAGCTCACAGAGCAAGAATTGGCTTAAACATTAGCTGCA
CCAAGTTTTGAGATTTAAATTAGGATCTGCTGCTTTTAATAAATATTAAC
TGGACATTGCTTGAACTTCCTTGAAGAGTCAGGCAAACAGTGCAGAGGTT
TCAAGATGAGCATTGCCAATAGCCTTCTGTAAACATATTTTCATCAGGTT
GTTTCTCCTCCTGGGTGTTCATGAATATGATTATGCATGACATCACTTAT
TTCATTCCTTGGTGTAACTGAGTATCATCTATTTTCAATTTTAGAAACAT
TTTTTAAAGTTTTTTCTATATATGTCAGAAATTGTACAGCACCCATTGCC
TTCCAAAAGCCAATGTTGAATTCTCAGTATGCTTATAGAACTATTCTAGA
TTTTCTAGGAAGATTGCAGAGAAAAAAATAAAAGGAAAAAATTGTTAATA
ATCACTCACATGTGGAACATGAATGCTGGAGCCCCCAAACAAAAGTGCTC
TCTTATCCTAAGTGGTGATTTTGTGGGGAGGGAAGCAGGCAAAGCTAAGC
CATAGAAAGTGGGAACGTCATGAACTATATTCATATCCATATAACTTTCC
AGAAAAAATCT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAAGAGTTTTTTTTTTAATTTAGCTTT
GAATGTCCTATTCTTTCCTAAAAATAATAGTGTATTTGATAATTCTCACT
TGTATATCAGTATCATTTTATTTAAAAATTTTCACACAATTTATTTTGGT
TTATCAGTTTTGAAAGTATGTACTTAGAAAGTAGCCCCAACCCCAAAATA
GACTGTTTTTTTTTGTGTGTGTGTGTGTGATATTTTAAACAGATATATTA
GTGTCTAGAAAATGTATATGATGGTGTTACTTTGTGTATGACTGTAAATA
AAAAGTGGAAAATTACTTTCTTTCAAAAGCTTTTAAAAGATACATTTTCT
AGTGTGAAAAAATATAGCAAATAATTCAATGCTTGTTTGGTTCTGATTTT
TGAAACCATTTACTAAAATGACAATAGCTTAATGTGCTATATGGATTATA
AAATATTTTACAGGTGAATTAAAAATACCCTAAACTATTTTTATGACCTA
GTCAATGTATATAATTTATTAAAGAAAAAAAGATCACTAATTTAATTGGT
ATCATTAGCCCATTGATGGATTCAGATGGATAACAAACTTATAATGAAAT
TTAGCATTGGTTTAGTTATTATTTAGAGTCTGGCACATTAAGCAAGTGTA
AACAGTGCCAAATCTTGACAATTCACTATGGACTCCCAGTTTTAAAATGC
TTAATAAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l17.b1 MSMg01no523_l17.b1 CHROMAT_FILE:
MSMg01no523_l17.b1 PHD_FILE: MSMg01no523_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:44 2005
         (471 letters)



>mm_chr4_16873121_16873991
          Length = 871

 Score =  874 bits (452), Expect = 0.0
 Identities = 464/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcactatataaatgaagccagtatatgaaatacttgacatgaaataaaaat 63
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 671 ggaattctttcactctataaatgaagtcagtatatgaaatacttgacatgaaacaaaaat 612

                                                                       
Query: 64  gtgatgtatattattacatatatgagacaatatcttcaggctctgagagccacagtagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtgatgtatattattacatatatgagacaatatcttcaggctctgagagccacagtagct 552

                                                                       
Query: 124 cacagagcaagaattggcttaaacattagctgcaccaagttttgagatttaaattaggat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cacagagcaagaattggcttaaacattagctgcaccaagttttgagatttaaattaggat 492

                                                                       
Query: 184 ctgctgcttttaataaatattaactggacattgcttgaacttccttgaagagtcaggcaa 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgctgcttttaataaatattaagtggacattgcttgaacttccttgaagagtcaggcaa 432

                                                                       
Query: 244 acagtgcagaggtttcaagatgagcattgccaatagccttctgtaaacatattttcatca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acagtgcagaggtttcaagatgagcattgccaatagccttctgtaaacatattttcatca 372

                                                                       
Query: 304 ggttgtttctcctcctgggtgttcatgaatatgattatgcatgacatcacttatttcatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggttgtttctcctcctgggtgttcatgaatatgattatgcatgacatcacttatttcatt 312

                                                                       
Query: 364 ccttggtgtaactgagtatcatctattttcaattttagaaacattttttaaagttttttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccttggtgtaactgagtatcatctattttcaattttagaaacattttttaaagttttttc 252

                                                           
Query: 424 tatatatgtcagaaattgtacagcacccattgccttccaaaagccaat 471
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatatatgtcagaaattgtacagcacccattgccttccaaaagccaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_l17.g1 MSMg01no523_l17.g1 CHROMAT_FILE:
MSMg01no523_l17.g1 PHD_FILE: MSMg01no523_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
         (477 letters)



>mm_chr4_16725648_16726524
          Length = 877

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttttttttttaatttagctttgaatgtcctattctttcctaaaaataatagtgtatttga 67
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 208 ttttttttttaatttagctttgaatttcctattctttcctaaaaataatagtgtatttgg 267

                                                                       
Query: 68  taattctcacttgtatatcagtatcattttatttaaaaattttcacacaatttattttgg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taattctcacttgtatatcagtatcattttatttaaaaattttcacacaatttattttgg 327

                                                                       
Query: 128 tttatcagttttgaaagtatgtacttagaaagtagccccaaccccaaaatagactgtttt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttatcagttttgaaagtatgtacttagaaagtagccccaaccccaaaatagactgtttt 387

                                                                       
Query: 188 tttttgtgtgtgtgtgtgtgatattttaaacagatatattagtgtctagaaaatgtatat 247
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttttttgtgtgtgtgtgtgatattttaaacagatatattagtgtctagaaaatgtatat 447

                                                                       
Query: 248 gatggtgttactttgtgtatgactgtaaataaaaagtggaaaattactttctttcaaaag 307
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gatggtgttactttgtgtgtgactgtaaataaaaagtggaaaattactttctttcaaaag 507

                                                                       
Query: 308 cttttaaaagatacattttctagtgtgaaaaaatatagcaaataattcaatgcttgtttg 367
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttttaaaagatacattgtctagtgtgaaaaaatatagcaaataattcaatgcttgtttg 567

                                                                       
Query: 368 gttctgatttttgaaaccatttactaaaatgacaatagcttaatgtgctatatggattat 427
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 568 gttctgatttttgaaaccatttactaaaatgacaataacttaatgtgctatatggattat 627

                                                             
Query: 428 aaaatattttacaggtgaattaaaaataccctaaactatttttatgacct 477
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 628 aaaatattttacagttgaattaaaaataccctaaactatttttatgacct 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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