Query= MSMg01no523_l20.b1 MSMg01no523_l20.b1 CHROMAT_FILE:
MSMg01no523_l20.b1 PHD_FILE: MSMg01no523_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
(692 letters)
>mm_chr4_14139206_14140296
Length = 1091
Score = 1290 bits (667), Expect = 0.0
Identities = 685/691 (99%), Gaps = 1/691 (0%)
Strand = Plus / Plus
Query: 1 catgtgcttaaaacagctgcttggccttgaactgtcactgtgctctgggtccctcttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgcttaaaacagctgcttggccttgaactgtcactgtgctctgggtccctcttact 260
Query: 61 gtgtctttgctctgggaccctcttgctgtgcccctctgtgctgggctgtgtttctagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtctttgctctgggaccctcttgctgtgcccctctgtgctgggctgtgtttctagaag 320
Query: 121 tgccagcatctagataatcacaggtcagcctgtgcaatgtgacctgtgccagacagcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccagcatctagataatcacaggtcagcctgtgcaatgtgacctgtgccagacagcaat 380
Query: 181 gaattcgtgagaagtaataggtaatttgacctaatttggcttgagcctctcctgggctga 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattcctgagaagtaataggtaatttgacctaatttggcttgagcctctcctgggctga 440
Query: 241 gatgagattaccgactgaatacaattatacatgatcatttggtgcttttgacctacaggc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgagattaccaactgaatacaattatacatgatcatttggtgcttttgacctacaggc 500
Query: 301 agctagggactcaagttggatcatctcacctatgaaatttccccaagggtttctagataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctagggactcaagttggatcatctcacctatgaaatttccccaagggtttctagataa 560
Query: 361 tgactttaaatgctaattacaacatgtagtcaatgctctgataaaattgagagcattttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgactttaaatgctaattacaacatgtagtcaatgctctgataaaattgagagcattttg 620
Query: 421 atttatgatggatattaagtaagagcaggaataaaacccagtgtatttaaagggtttaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttatgatggatattaagtaagagcaggaataaaacccagtgtatttaaagggtttaaa 680
Query: 481 tgcactctgaaggtttgaacatgaaaagaaaactgcagagcactttttttttctttagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 tgcactctgaaggtttgaacatgaaaagaaaactgcagagcactttttttt-ctttagta 739
Query: 541 attatgttgttttagctagaaaatatgttccccttattactgtcaatgttgctactgtag 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 740 attatgttgttttagctagaaaatatgttccccttattactgtcaatgctgctactgtag 799
Query: 601 gaattgacctagttatgtccaaattgacaatctcaaaaaattgccttttccaacttggca 660
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 800 gaattgacctagttatgtccaaattgacagtctcaaaaaattgccttctccaacttggca 859
Query: 661 acatttgtaggtacaaccatggcagggctgc 691
|||||||||||||||||||||||||||||||
Sbjct: 860 acatttgtaggtacaaccatggcagggctgc 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space: 737242
Effective search space used: 737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_l20.g1 MSMg01no523_l20.g1 CHROMAT_FILE:
MSMg01no523_l20.g1 PHD_FILE: MSMg01no523_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
(685 letters)
>mm_chr4_14302907_14303991
Length = 1085
Score = 1324 bits (685), Expect = 0.0
Identities = 685/685 (100%)
Strand = Plus / Minus
Query: 1 caaaaactctcacttcccaaggccttcttttatggcctctgttgtcacagttgctgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 caaaaactctcacttcccaaggccttcttttatggcctctgttgtcacagttgctgagct 826
Query: 61 gggataccagttaaatgctcatccaaagagcaacctggaaacactccaaaggacagacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gggataccagttaaatgctcatccaaagagcaacctggaaacactccaaaggacagacct 766
Query: 121 gtgactgagtggagacaagtccacatgtatatgcttcctcaatacttacaggaagaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gtgactgagtggagacaagtccacatgtatatgcttcctcaatacttacaggaagaaaga 706
Query: 181 actcctgcatgcgacttgtaagttctctagaagtcttctaggatttaggaacaagatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 actcctgcatgcgacttgtaagttctctagaagtcttctaggatttaggaacaagatgct 646
Query: 241 tgagagccactatcctccatctgctgtctctcttatacactgcagtggtccattgctcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tgagagccactatcctccatctgctgtctctcttatacactgcagtggtccattgctcac 586
Query: 301 ttatctccattggattgaattttctgacactttgttcttatgtcttgtttctagtgaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttatctccattggattgaattttctgacactttgttcttatgtcttgtttctagtgaacc 526
Query: 361 tagttctaaggtgccctggttttaagataatccctggagaatatagtgactaagtatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tagttctaaggtgccctggttttaagataatccctggagaatatagtgactaagtatatt 466
Query: 421 ggtattaattagaggttgagactatcatgcaaataaataaaaacataatcataaagattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggtattaattagaggttgagactatcatgcaaataaataaaaacataatcataaagattt 406
Query: 481 gtttaaatcaacttatatgaataaaaagtactattgaacacatgcacacaataccccttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtttaaatcaacttatatgaataaaaagtactattgaacacatgcacacaataccccttg 346
Query: 541 cttttcttttgagcaaagaattgtaattcaagaatgtgctgttgaagctcaaatatttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cttttcttttgagcaaagaattgtaattcaagaatgtgctgttgaagctcaaatatttcc 286
Query: 601 tgtcaggcatagagtttttaataggaagaacaaataaaatgttatttatgcaaattataa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtcaggcatagagtttttaataggaagaacaaataaaatgttatttatgcaaattataa 226
Query: 661 tattggctaagaattctataggctg 685
|||||||||||||||||||||||||
Sbjct: 225 tattggctaagaattctataggctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
