Query= MSMg01no523_n23.b1 MSMg01no523_n23.b1 CHROMAT_FILE:
MSMg01no523_n23.b1 PHD_FILE: MSMg01no523_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:56 2005
(664 letters)
>mm_chr4_88883387_88884450
Length = 1064
Score = 1127 bits (583), Expect = 0.0
Identities = 658/723 (91%), Gaps = 62/723 (8%)
Strand = Plus / Minus
Query: 4 gaattctactgtcctttctctaaaccagtagtatttctaaactacattctaaatacttat 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 gaattctactgtcccttctctaaaccagtagtatttctaaactacattctaaatacttat 961
Query: 64 ccttaaatctacagataagtgtagctctctccaactcaagaggcttcttttgcaacagat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 ccttaaatctacagataagtgtagctctctccaactcaagaggcttcttttgcaacagat 901
Query: 124 cgagaccattacaggaagccacaactggtcaaactgcagagaagaactgaccaaggggtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cgagaccattacaggaagccacaactggtcaaactgcagagaagaactgaccaaggggtg 841
Query: 184 cccatctccagttgatacttctagagttcaccctttactcccaaggctcaggggacactg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cccatctccagttgatacttctagagttcaccctttactcccaaggctcaggggacactg 781
Query: 244 tgaaagagtgtaacgagacagagaactaggaaagatgtctgtttcaggatagtttcttct 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tgaaagagtgtaatgagacagagaactaggaaagatgtctgtttcaggatagtttcttct 721
Query: 304 atatatgacagggacattgtacccctatagtctctacaatatgactgaacagtagccata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atatatgacagggacattgtacccctatagtctctacaatatgactgaacagtagccata 661
Query: 364 tcagttgacaccttagatggaggaatctcataagagcccattcctagacgaatggcgaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcagttgacaccttagatggaggaatctcataagagcccattcctagacgaatggcgaca 601
Query: 424 gactttttataatggttgagagaaaattaatcatttttctccaggg-------------- 469
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gactttttataatggttgagagaaaattaatcatttttctccagggatgagcctcctaag 541
Query: 470 ----------------------------------------atgactcagcaggatatata 489
||||||||||||||||||||
Sbjct: 540 tgattaatcaatcaagtggtcagccataaagtatatacatatgactcagcaggatatata 481
Query: 490 tatatatat--------atatatatatatatatatatatatatatcaaagacagtataca 541
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tatatatatatatatacatatatatatatatatatatatatatatcaaagacagtataca 421
Query: 542 tacataaaattaaattaaaaaaaaagaagaagatccatctttttgctgcctccaagcagc 601
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tacataaaattaaatttaaaaaaaagaagaagatccatctttttgctgcctccaagcagc 361
Query: 602 acaccaagccatcaacaacagacaccatgttggggcaaaaaggtgaaatatggtcaatat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acaccaagccatcaacaacagacaccatgttggggcaaaaaggtgaaatatggtcaatat 301
Query: 662 acc 664
|||
Sbjct: 300 acc 298
Score = 80.0 bits (41), Expect = 6e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 482 gatatatatatatatatatatatatatatatatatatatatatat 526
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 gatatatatatatatatatatatatatatgtatatatatatatat 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 6
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_n23.g1 MSMg01no523_n23.g1 CHROMAT_FILE:
MSMg01no523_n23.g1 PHD_FILE: MSMg01no523_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:56 2005
(589 letters)
>mm_chr4_88696253_88697241
Length = 989
Score = 1040 bits (538), Expect = 0.0
Identities = 588/632 (93%), Gaps = 43/632 (6%)
Strand = Plus / Plus
Query: 1 agttttagtgcttttattcatttaggtaagtaatatatagaaaacaatggggttcataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 agttttagtgcttttattcatttaggtaagtaatatatagaaaacaatggggttcataac 217
Query: 61 ttttacagtattactttgtgtgtgtgtgtgtg---------------------------- 92
||||||||||||||||||||||||||||||||
Sbjct: 218 ttttacagtattactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag 277
Query: 93 --------------agagagagagagagagagagagagagagagagagagattgagaaca 138
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agagagagagagagagagagagagagagagagagagagagagagagagagattgagaaca 337
Query: 139 tacagtggtcagaggacgacttgtgggaattggttatttccttccaccttgggttcttag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tacagtggtcagaggacgacttgtgggaattggttatttccttccaccttgggttcttag 397
Query: 199 gctcaaactcagggcatcaggttgtatagtaaatgctttattaattgagccatctcatta 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gctcaaactcagggcatcaggttgtatagtaaatgctttattaattgagccatctcatta 457
Query: 259 gcctttttttt-ctttaaattgattgtatttgaaatgttcttcagtcttcaaaaagcaat 317
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 458 gcctttttttttctttaaattgattgtatttgaaatgttcttcagttttcaaaaagcaat 517
Query: 318 ttgtatgtattttcctaattactcagaagagtttcttcagtatctgactttgcaagcaat 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgtatgtattttcctaattactcagaagagtttcttcagtatctgactttgcaagcaat 577
Query: 378 ataataatatctctaatgtgctcttgcacattagaccagcacataagtggggttttctaa 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ataataatatctctaatgtgctcttgcacattagaccagcacataagtggggttttctaa 637
Query: 438 atggcagtgatttccatgtgagttttcatctgatgattatggtttatgtggcttccctga 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atggcagtgatttccatgtgagttttcatctgatgattatggtttatgtggcttccctga 697
Query: 498 aactggccagcagtgatacatgagtggcaggcagcagtgttgtgattacagagaataaga 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aactggccagcagtgatacatgagtggcaggcagcagtgttgtgattacagagaataaga 757
Query: 558 agacattacgaaggagtgtatcaattacggaa 589
||||||||||||||||||||||||||||||||
Sbjct: 758 agacattacgaaggagtgtatcaattacggaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
