Query= MSMg01no524_c01.b1 MSMg01no524_c01.b1 CHROMAT_FILE:
MSMg01no524_c01.b1 PHD_FILE: MSMg01no524_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:17 2005
(316 letters)
>mm_chr4_87629462_87630181
Length = 720
Score = 520 bits (269), Expect = e-152
Identities = 296/307 (96%), Gaps = 4/307 (1%)
Strand = Plus / Minus
Query: 13 ggaattctgttgtcactgtttaagtaaataaagcaact----gccggctgctcacagagc 68
||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 519 ggaattctgttgtcactgtttaaataaataaggcaactgccggccggctgctcacagagc 460
Query: 69 ttttgtctctggtacagatatcatgtcctggcatttttcatattctattatcaaagccaa 128
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttttgtccctggtacagatataatgtcctggcatttttcatattctattatcaaagccaa 400
Query: 129 ggtctagaattttaagtgggaagttggcactagaataataaaatgccggacaaagctcat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggtctagaattttaagtgggaagttggcactagaataataaaatgccggacaaagctcat 340
Query: 189 ctgaaagtccaataaagtgaaattacagcattgcagagcaagagagttctggagctaaat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgaaagtccaataaagtgaaattacagcattgcagagcaagagagttctggagctaaat 280
Query: 249 cccccaagtttggggatcttctctataaagatgttattgtgtggggagaggggaggggag 308
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 279 cccacaaatttggggatcttctctataaagatgttattgtgtggggagaggggaggggcg 220
Query: 309 ggagttt 315
|||||||
Sbjct: 219 ggagttt 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 720
Length adjustment: 9
Effective length of query: 307
Effective length of database: 711
Effective search space: 218277
Effective search space used: 218277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_c01.g1 MSMg01no524_c01.g1 CHROMAT_FILE:
MSMg01no524_c01.g1 PHD_FILE: MSMg01no524_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:18 2005
(636 letters)
>mm_chr4_87490652_87491686
Length = 1035
Score = 1162 bits (601), Expect = 0.0
Identities = 625/633 (98%), Gaps = 1/633 (0%)
Strand = Plus / Plus
Query: 4 caggtcttaaaaaactgtttctgaatcattaacctcaccattcaatgctactgagcagcg 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caggtcttaaaaaactgtttctgaatcattaacctcaccattcaatgctactgagcagct 263
Query: 64 cagactaattaccactctaggtgaggcttacacatgttggataattcaaatctctttgcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagactaattaccactctaggtgaggcttacacatgttggataattcaaatctctttgcc 323
Query: 124 taaagatgattaagagcaatggagtatcgagtaatccaaagagagagcacgtgcataatt 183
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 324 taaagatgattaagagcaatggagtatc-agtactccaaagagagagcacgtgcataatt 382
Query: 184 caaatctcaaatacggaaagcaaatgactacttaaacatgaattcacaggcatccgcact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 383 caaatctcaaatacggaaagcaaatgactacttaaacatgaattcacaggcatccacact 442
Query: 244 agctctgcaacctgggatgctaaggtacagcgttttcatccatgccgttcgactgaatgc 303
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 443 agctctgcaacctgggatgctaaggtacagcgttttcatccatgccgtttgactgaatgc 502
Query: 304 ctctttgttttaattttctggggcaaaatggtctctttactgtgcaattccatctaatgg 363
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 503 ctctttgttttaattttctggggcaaaattgtctctttagtgtgcaattccatctaatgg 562
Query: 364 ggcttgtctgtaactctagcacatagcctaagaaagagagaggaggtgagaaaagaactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggcttgtctgtaactctagcacatagcctaagaaagagagaggaggtgagaaaagaactg 622
Query: 424 gacatagaagggctttctgattatgggtggctttcatttccctgtcctcttcctactgac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gacatagaagggctttctgattatgggtggctttcatttccctgtcctcttcctactgac 682
Query: 484 aactcaatgctgattcttcctgtttcctcccctgggctttcttctgtcccgctctaaccg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aactcaatgctgattcttcctgtttcctcccctgggctttcttctgtcccgctctaaccg 742
Query: 544 gtcttctacactgtgggagattttcagattgatggaacttgaattggacaaataaagatg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtcttctacactgtgggagattttcagattgatggaacttgaattggacaaataaagatg 802
Query: 604 accaaacccagtaaactatcctgggtaagttta 636
|||||||||||||||||||||||||| ||||||
Sbjct: 803 accaaacccagtaaactatcctgggtgagttta 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
