Query= MSMg01no524_h09.b1 MSMg01no524_h09.b1 CHROMAT_FILE:
MSMg01no524_h09.b1 PHD_FILE: MSMg01no524_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:45 2005
(562 letters)
>mm_chr4_135471533_135472494
Length = 962
Score = 1019 bits (527), Expect = 0.0
Identities = 551/559 (98%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 4 ggaattcccctgggtttcaaagggaagtttcaggatttatctttttagaaagcaaaagac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccctgggtttcaaagggaagtttcaggatttatctttttagaaagcaaaagac 263
Query: 64 caaaacatcttgcaagttacttctgcttgtttggaaacaaaaagacttagcttgaggaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaaacatcttgcaagttacttctgcttgtttggaaacaaaaagacttagcttgaggaaa 323
Query: 124 aaaggtaaatgcttggcagcaaactataaatggatatttttggggttggtgagatggctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaggtaaatgcttggcagcaaactataaatggatatttttggggttggtgagatggctc 383
Query: 184 agcagttaagagctcttccgaaggtcctgagttcaaatcccagcaactacatgatggctc 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcagtcaagagctcttccgaaggtcctgagttcaaatcccagcaactacatgatggctc 443
Query: 244 acaaaccatccataatgagatctgacgccctcttctagtgtgtctaaagacagctacaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaaccatccataatgagatctgacgccctcttctagtgtgtctaaagacagctacaat 503
Query: 304 gtacttacatatataattataaataaatctttaggctggagcaagtggggtagagtgagc 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 gtacttacatatataattataaataaatctttgggctggagcaagtggggtagagtgagc 563
Query: 364 agaggccctgagttcaattcccagcaaccacataatggcttacaaccatttgtacagtta 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 agaggccctgagttcaattcccagcaaccacataatggcttacaaccatctgtacagtta 623
Query: 424 cagtgtaatcatataaataaaataaattagtctttaaaaaatttttttgtgtgtgctggt 483
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 624 cagtgtaatcatataaataaaataaataagtctttaaaat-tttttttgtgtgtgctggt 682
Query: 484 gtagtgttggcacatgcctttaatcccagcacgtgggaggcagaggcaggcggatttctg 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 683 gtagtgttggcacatgcctttaatcccagcacgtgggaagcagaggcaggcggatttctg 742
Query: 544 agtttgaggcctgcctggt 562
||||||||||| |||||||
Sbjct: 743 agtttgaggccagcctggt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_h09.g1 MSMg01no524_h09.g1 CHROMAT_FILE:
MSMg01no524_h09.g1 PHD_FILE: MSMg01no524_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:45 2005
(624 letters)
>mm_chr4_135597244_135598267
Length = 1024
Score = 731 bits (378), Expect = 0.0
Identities = 396/402 (98%), Gaps = 2/402 (0%)
Strand = Plus / Minus
Query: 1 acaggctttatgctgacccggaaggctagcccacagaagtgggagggcacaagctacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acaggctttatgctgacccggaaggctagcccacagaagtgggagggcacaagctacaca 342
Query: 61 gcctgggagatctgggacagagagacccatccaggactggctcctaaaaatcttggcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcctgggagatctgggacagagagacccatccaggactggctcctaaaaatcttggcatc 282
Query: 121 ttggtaaatttttttctttttctgaatttcctatctttgataaataggaataaatactcc 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttggtgaatttttttctttttctgaatttcctatctttgataaataggaataaatactcc 222
Query: 181 tacctgatttggttactgtgtttttgtttttgagaagatttctctgtgtagccctggctg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 221 tacctgatttggttactgtgtttttgttttcgagaagatttctctgtgtagccctggctg 162
Query: 241 tcctgaaacttactctgtagaccaggctagcctcacaagattcctctgcctctgcctcct 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 161 tcctgaaacttactctgtagaccaggctagcttcacaagattcctctgcctctgcctcct 102
Query: 301 gagtgctgggattaaaggtgtgggtcacca-ctgccaggcttaatccagatcttttaaag 359
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 101 gagtgctgggattaaaggtgtgggtcaccacct-ccaggcttaatccagatcttttaaag 43
Query: 360 tgggaaagtcctcctttaatttgggccacacctcctggtggc 401
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 42 tggggaagtcctcctttaatttgggccacacctcctggtggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
