BAC Information

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BAC

Clone NameMSMg01-524L02
Chromosome4 (Build37)
Map Location 145,425,541 - 145,425,725
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524L02.T7 (MSMg01no524_l02.b1)MSMg01-524L02.TJ (MSMg01no524_l02.g1)
ACCAG594709AG594710
length585763
length of high quality
(start - end)		186 (53 - 238)647 (65 - 711)
definitionCHROMAT_FILE: MSMg01no524_l02.b1 PHD_FILE: MSMg01no524_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:02 2005CHROMAT_FILE: MSMg01no524_l02.g1 PHD_FILE: MSMg01no524_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGCGTAACATCTATAGAGAGATCCGAATCTGCACAAGTGAGGATCCAGTG
GACTTCTGAATTGCTGCCCAGTGCCTGCTTTTCTAACTCTCCTAATTACT
CCTCAAACTTGCAAATTCTTTCATATATACATGAATATATATATACACAC
CCCACATATCATTCCTACTTCTGGGAATTAAAACAACGAATGTACTTGAC
TAAGAATTTTTCTAACACCTGTTTATTATGTTTTTGTATTTTGTGTTTAC
TCTTTTATTAATTATTTATTAATTAAACCCTTTCTCCCCCCAAAAAAACT
TTGTTGGGGAAAAAAATTTTTTTAACACTTTTCCCCCGTGGGTGGGGGGG
GNNNTTTTTTCCCCGGGGGNNNNNNGGNNNNNNNNNNNNNGGGAGGTNNN
NNNNNNTTNNNNATACTNNCAAGNNNNNTNNNNNNNNNNNCCCCACCCAT
NATNTAGGGGNNNTGGGNNNNNNNNNNNNGGGATGTAGGGGGTTGGGGGG
GNNGGATANNNNNNNNNNNTGGTGTNGGGGGGNNTAAAAAANAGNGAGGT
TGGNNNNATAATATTATTTTTTACCNCCGGNNNNA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACGATGAATACTAAGAGGGGATGGTTGGGTAAAGC
ATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAATTCTA
CGATGAATACTAAGATGGGATGGTTGGGTAAAGCATTTGTCACACTCACT
GCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAACTCTCAGAC
TGCCTTTGTCAGTAAAGCATTTGTCACACTCATTACATTTGTAAGGTTTC
TCTCCTGTATGAATTCTCTGATGCTTTCTCAGAGTGAATTTGTCAGTAAA
GCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTC
TCTGATGCTTTCTCAGAGTGCATTTGTCAGGAAAGCATTTGTCGCATTCA
CTACATTTGTAAGGTTTCTTTCCTGAATGAATTCTACGATGAATACTAAG
ATGGGATGGTTGGGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGTT
TCTCTCCTGTATGAATTCTCTGATGAACTCTCAGACTGCCTTTGTCAGTA
AAGCATTTGTCACATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAAT
TCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAAGCATTTGTCGCATT
CACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCTTTCTC
AGAGTGCATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_l02.b1 MSMg01no524_l02.b1 CHROMAT_FILE:
MSMg01no524_l02.b1 PHD_FILE: MSMg01no524_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:02 2005
         (186 letters)



>mm_chr4_145425341_145425932
          Length = 592

 Score =  228 bits (118), Expect = 1e-64
 Identities = 171/194 (88%), Gaps = 17/194 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctga-a-ttgctgcccagtg-cctgcttttctaactctcctaattactcctcaaact 57
           ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctgatagttgctgcccagtgccctgcttttctaactctcctaattactcctcaaact 260

                                                                       
Query: 58  tg-caaattctttcatatatacatgaatatatatatacacac-cccacatatcattccta 115
           || |||||||||||||||||| ||||||| | | | |||||| | |||||||||||||||
Sbjct: 261 tgtcaaattctttcatatatatatgaatacacacacacacacacacacatatcattccta 320

                                                                       
Query: 116 cttctgggaattaa-aacaacg--aatgtacttgactaagaatttttctaacacctgttt 172
           |||||||||||||| |||||||  ||||        ||||||||||||||||||||||| 
Sbjct: 321 cttctgggaattaagaacaacgtaaatg--------taagaatttttctaacacctgtt- 371

                         
Query: 173 attatgtttttgta 186
           ||||||||||||||
Sbjct: 372 attatgtttttgta 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 592
Length adjustment: 8
Effective length of query: 178
Effective length of database: 584
Effective search space:   103952
Effective search space used:   103952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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