BAC Information

Click to search

BAC

Clone NameMSMg01-524N17
Chromosome4 (Build37)
Map Location 136,524,708 - 136,578,506
singlet/doubletdoublet
Overlap geneZbtb40
Upstream geneLypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8
Downstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524N17.T7 (MSMg01no524_n17.b1)MSMg01-524N17.TJ (MSMg01no524_n17.g1)
ACCAG594835AG594836
length777747
length of high quality
(start - end)		568 (41 - 608)621 (68 - 688)
definitionCHROMAT_FILE: MSMg01no524_n17.b1 PHD_FILE: MSMg01no524_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:15 2005CHROMAT_FILE: MSMg01no524_n17.g1 PHD_FILE: MSMg01no524_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,524,708 - 136,525,271)(136,577,886 - 136,578,506)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGACACCACAGCCCGGAAGGAGTGTGCTCATTTCAAAAGCCACAGGGGG
CTGGGGGACCGGTCAAGGTGAACTGCAGCCGATTATGGTGTCTGCAGAGC
CCTCCCATGGCTGAATACAAGACAAGAATGAAGTCCGGAAAAGTATTACC
GGCTCTGTGCCTGGGTCTCAGAGGGCCCAGCTGAAGGCCTTGCAACGAAT
AACGACAGTGTCTTGAGCCAGAGTTGGTTTAGTGACCTTGGCAAGGCAGG
GCTAGTGGGTGCCACACCCTCCTCTGTGGCAATGGTGTCTGAACGTGAGC
CTGGAGATCAGGCCAACCTTGCCACAAGATTCTGCTGTTCTGCTGATCGT
CAGCCGTGGGCCAGCCTCTCGGGATACCTGCTTCTTCCCCTGACACCTAT
GCTGCCTGCTCGGAGAATGGCTGAGAGGATCAAGCCGGTGACAGATGTGG
CGGGCCACGTGGTGAGGGGGATTCACTCAGCAAGCATTTCCTGGACACCT
GCACCAGGCCAGCTGTGGGGACCCAGCAGTAAGCACAGCTGGTCAGGTCC
CTGTGCTGAAGGGNAAAANGGGGGGGCTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTCTACAGTCTCTTGGAAGTGACTCTGTAAGA
TTTGCTCTGTGTGTGAGTGTTTTGCTTGCTTGTATGTCTGTGTGCTTTGT
TTGTCCCTGGTGCCTGTGGAGGCCAGAAGAGGGCATCATCTTCCCTAGGA
CTGGGGTTACGGGTGGGTATAAGCCACCCTGGGGCACTGGTGGCACATTA
GGAGAGAGAACTCAAGGAAATGTGCAGGGTACCCTGTGACTGGGTGCTCG
GCCTTCATCAGTTCATTAGTCAGGGTTCAGGTTTTCTGGGCCATGCTTGT
TTGACGGAGGCTTTTGCCCAGGGCCTCTGTTCTTGGTGATCGTCTGCTTC
TGCCTGGCACCCATCTTATGGAGGAAGTGTCTCTCTCCTCTAATCAAGGT
TTCTCCATCGTTCAGCTTTTTGGTTATTGTCAGGACCATGGCGCCTTACA
CACCCTTCAGATGCAAGCTGAAGCCTGGACTCCAGGTAAGGTTTGTTTCT
ATTTCCCGGGTGTCAGAACACATGAGACTAGTAGTAGATGCCAACAGAAG
CAGCCATGATTATTTAACAAAAGCAGCTACTGTTTCTCTTCTATTTAAAG
AGAAATTCTCACCCTTCTCTTACCCCATGGAGATACCACAATTTTGTCAT
CAGTGTAGAGTCCACAAATGCAAACCTGAGCTGTGCCCTCATTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_n17.b1 MSMg01no524_n17.b1 CHROMAT_FILE:
MSMg01no524_n17.b1 PHD_FILE: MSMg01no524_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:15 2005
         (568 letters)



>mm_chr4_136524504_136525471
          Length = 968

 Score = 1091 bits (564), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgacaccacagcccggaaggagtgtgctcatttcaaaagccacagggggctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgacaccacagcccggaaggagtgtgctcatttcaaaagccacagggggctgg 264

                                                                       
Query: 65  gggaccggtcaaggtgaactgcagccgattatggtgtctgcagagccctcccatggctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggaccggtcaaggtgaactgcagccgattatggtgtctgcagagccctcccatggctga 324

                                                                       
Query: 125 atacaagacaagaatgaagtccggaaaagtattaccggctctgtgcctgggtctcagagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacaagacaagaatgaagtccggaaaagtattaccggctctgtgcctgggtctcagagg 384

                                                                       
Query: 185 gcccagctgaaggccttgcaacgaataacgacagtgtcttgagccagagttggtttagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccagctgaaggccttgcaacgaataacgacagtgtcttgagccagagttggtttagtg 444

                                                                       
Query: 245 accttggcaaggcagggctagtgggtgccacaccctcctctgtggcaatggtgtctgaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accttggcaaggcagggctagtgggtgccacaccctcctctgtggcaatggtgtctgaac 504

                                                                       
Query: 305 gtgagcctggagatcaggccaaccttgccacaagattctgctgttctgctgatcgtcagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgagcctggagatcaggccaaccttgccacaagattctgctgttctgctgatcgtcagc 564

                                                                       
Query: 365 cgtgggccagcctctcgggatacctgcttcttcccctgacacctatgctgcctgctcgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgtgggccagcctctcgggatacctgcttcttcccctgacacctatgctgcctgctcgga 624

                                                                       
Query: 425 gaatggctgagaggatcaagccggtgacagatgtggcgggccacgtggtgagggggattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaatggctgagaggatcaagccggtgacagatgtggcgggccacgtggtgagggggattc 684

                                                                       
Query: 485 actcagcaagcatttcctggacacctgcaccaggccagctgtggggacccagcagtaagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actcagcaagcatttcctggacacctgcaccaggccagctgtggggacccagcagtaagc 744

                                   
Query: 545 acagctggtcaggtccctgtgctg 568
           ||||||||||||||||||||||||
Sbjct: 745 acagctggtcaggtccctgtgctg 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_n17.g1 MSMg01no524_n17.g1 CHROMAT_FILE:
MSMg01no524_n17.g1 PHD_FILE: MSMg01no524_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:15 2005
         (621 letters)



>mm_chr4_136577513_136578533
          Length = 1021

 Score = 1201 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctacagtctcttggaagtgactctgtaagatttgctctgtgtgtgagtgttttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 attctacagtctcttggaagtgactctgtaagatttgctctgtgtgtgagtgttttgctt 935

                                                                       
Query: 61  gcttgtatgtctgtgtgctttgtttgtccctggtgcctgtggaggccagaagagggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gcttgtatgtctgtgtgctttgtttgtccctggtgcctgtggaggccagaagagggcatc 875

                                                                       
Query: 121 atcttccctaggactggggttacgggtgggtataagccaccctggggcactggtggcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 atcttccctaggactggggttacgggtgggtataagccaccctggggcactggtggcaca 815

                                                                       
Query: 181 ttaggagagagaactcaaggaaatgtgcagggtaccctgtgactgggtgctcggccttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttaggagagagaactcaaggaaatgtgcagggtaccctgtgactgggtgctcggccttca 755

                                                                       
Query: 241 tcagttcattagtcagggttcaggttttctgggccatgcttgtttgacggaggcttttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tcagttcattagtcagggttcaggttttctgggccatgcttgtttgacggaggcttttgc 695

                                                                       
Query: 301 ccagggcctctgttcttggtgatcgtctgcttctgcctggcacccatcttatggaggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ccagggcctctgttcttggtgatcgtctgcttctgcctggcacccatcttatggaggaag 635

                                                                       
Query: 361 tgtctctctcctctaatcaaggtttctccatcgttcagctttttggttattgtcaggacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtctctctcctctaatcaaggtttctccatcgttcagctttttggttattgtcaggacc 575

                                                                       
Query: 421 atggcgccttacacacccttcagatgcaagctgaagcctggactccaggtaaggtttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atggcgccttacacacccttcagatgcaagctgaagcctggactccaggtaaggtttgtt 515

                                                                       
Query: 481 tctatttcccgggtgtcagaacacatgagactagtagtagatgccaacagaagcagccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctatttcccgggtgtcagaacacatgagactagtagtagatgccaacagaagcagccat 455

                                                                       
Query: 541 gattatttaacaaaagcagctactgtttctcttctatttaaagagaaattctcacccttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gattatttaacaaaagcagctactgtttctcttctatttaaagagaaattctcacccttc 395

                                
Query: 601 tcttaccccatggagatacca 621
           |||||||||||||||||||||
Sbjct: 394 tcttaccccatggagatacca 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |