BAC Information

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BAC

Clone NameMSMg01-524O24
Chromosome4 (Build37)
Map Location 114,776,394 - 114,919,693
singlet/doubletdoublet
Overlap geneCyp4x1, Cyp4a21-ps, LOC384042, LOC230639
Upstream geneLOC100040625, A630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1
Downstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524O24.T7 (MSMg01no524_o24.b1)MSMg01-524O24.TJ (MSMg01no524_o24.g1)
ACCAG594895AG594896
length746738
length of high quality
(start - end)		548 (45 - 592)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no524_o24.b1 PHD_FILE: MSMg01no524_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:22 2005CHROMAT_FILE: MSMg01no524_o24.g1 PHD_FILE: MSMg01no524_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:22 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(114,919,149 - 114,919,693)(114,776,394 - 114,776,639)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTCACCTGCTCTCCCCAGAATCACTTTCATGTAGTCAGGGTCG
TAGACCTTGATGAAGACATGACTTCCCCATATCCAGTGGAGAAATGCACC
TGGGAATTTCTCTAAATATCTTAGAATCCATCTCAGCTCCTCATCCACTT
TGAACTGCCACCAGGAGAAACAAAGCAAATGATATCATCTTGAACAGGCT
GGAAGTAGAAATGATAAGTTGACAGATACAGAGACATGGTGCTAGATCTA
TCCATAGAGTGCTAAGTATCTGACTGTGAGGAACTGCAGCATGGTCTACT
CTCATTGTGACTGCCCAGATCATGGTATAAAGGTAAGAATGTGACTCCAT
GTTGGGCCATGTAAGAGCTCTCTCTCTGAATTGCCCTTACAGCCTTGCTT
GATTAGTTCCCAGTGCTGGCTTCCAAAGGGCAAAAGTTAATATCAACTTA
CTCTTGTTAGATTCATGTCTTCATCATGTTCTGCTCAAAATCATACATTG
AAATGCTAAACCTTAGAACCTCAAAATGTAACACTATCAGGACATAGGGT
CTTCAAAGAGGGAACCAAAGCAAAATGAGGCATTGATAATAGACCTAACC
CACTATACTGTTGTCCTTTAGGAAAGAGGAAATTTGTGCAGAACAATAAA
CACAGAGATAGATATGTAGTGTCATAATAACATGATTACCATTTAN

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAATCAAGAACAACCCAATTTTCCA
CCAGGCTACAGGTTAGATTTTAAAAGAAGCCTCTGGGATCTTCACTGTTG
TAAGTTACGGACTAACTCAAGCACTCATGGCCATAGTTGCTGTAATTAGT
GAAGCTCCTACTTAGCCTTACTTGGCTAAGTACCAATTACACAGTGAAGC
AAGGGGATTGTTCCTCAGGTATGCATAGCTCCGGGCTTCTGCAGCTTTGC
ATATGGGCACAGAGGAGACGACTTGAAAGCAAAAGCATGTTACAGTTATG
TGAGCCTCTCAGCTGTATCTGTAGGGAGATTTGGTATTTGAGGCTACATT
TCTTTATCTCTTCATATACCACCAGCAAGATATGGCTTTTATTAATTCTG
AGATAGTAGATTTTCTGTTTGATGAAGGGAATTTTTGGCTCCTCCTTGCA
ATAGGTTGCCATGTTTATTAGCATCTTTGACTGATTTCCCCATAATCCCC
ATAATTAAAATTTTCAGAAAAGGGACTGATGGACAGCTGGTGAGAGGAGG
ATTGTTCTCTGAAGTCTTCCTGTAATTGGACAGAATGACTGTGGTCAGTT
TCTCGAATCTTAGATTCTGCCTCTTTATTCACACATCCAGCCAATCCACA
AGTTCTCTTTACTCTTTTTAATGCCATCAAAATCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_o24.b1 MSMg01no524_o24.b1 CHROMAT_FILE:
MSMg01no524_o24.b1 PHD_FILE: MSMg01no524_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:22 2005
         (548 letters)



>mm_chr4_114918946_114919893
          Length = 948

 Score = 1031 bits (533), Expect = 0.0
 Identities = 542/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctcacctgctctccccagaatcactttcatgtagtcagggtcgtagacct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 748 ggaattcactctcacctgctctccccagaatcactttcatgtagtcagggtcgcagacct 689

                                                                       
Query: 64  tgatgaagacatgacttccccatatccagtggagaaatgcacctgggaatttctctaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgatgaagacatgacttccccatatccagtggagaaatgcacctgggaatttctctaaat 629

                                                                       
Query: 124 atcttagaatccatctcagctcctcatccactttgaactgccaccaggagaaacaaagca 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 628 atcttagaatccatctcagctcctcatccactttgaactgccacaaggagaaacaaagca 569

                                                                       
Query: 184 aatgatatcatcttgaacaggctggaagtagaaatgataagttgacagatacagagacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatgatatcatcttgaacaggctggaagtagaaatgataagttgacagatacagagacat 509

                                                                       
Query: 244 ggtgctagatctatccatagagtgctaagtatctgactgtgaggaactgcagcatggtct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggtgctagatctatccatagagtgctaagtatctgactgtgaggaactgcagcatggtct 449

                                                                       
Query: 304 actctcattgtgactgcccagatcatggtataaaggtaagaatgtgactccatgttgggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 448 actctcattgtgactgcccagatcatggtataaaggtaagaatgtgaatccatgttgggc 389

                                                                       
Query: 364 catgtaagagctctctctctgaattgcccttacagccttgcttgattagttcccagtgct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catgtaagagctctctctctgaattgcccttacagccttgcttgattagttcccagtgct 329

                                                                       
Query: 424 ggcttccaaagggcaaaagttaatatcaacttactcttgttagattcatgtcttcatcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggcttccaaagggcaaaagttaatatcaacttactcttgttagattcatgtcttcatcat 269

                                                                       
Query: 484 gttctgctcaaaatcatacattgaaatgctaaaccttagaacctcaaaatgtaacactat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gttctgctcaaaatcatacattgaaatgctaaaccttagaacctcaaaatgtaacactat 209

                
Query: 544 cagga 548
           |||||
Sbjct: 208 cagga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_o24.g1 MSMg01no524_o24.g1 CHROMAT_FILE:
MSMg01no524_o24.g1 PHD_FILE: MSMg01no524_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:22 2005
         (246 letters)



>mm_chr4_114776194_114776839
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaatcaagaacaacccaattttccaccaggctacaggttagattttaaaagaagcctc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatcaagaacgacccaattttccaccaggctacaggttagattttaaaagaagcctc 260

                                                                       
Query: 61  tgggatcttcactgttgtaagttacggactaactcaagcactcatggccatagttgctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggatcttcactgttgtaagttacggactaactcaagcactcatggccatagttgctgt 320

                                                                       
Query: 121 aattagtgaagctcctacttagccttacttggctaagtaccaattacacagtgaagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattagtgaagctcctacttagccttacttggctaagtaccaattacacagtgaagcaag 380

                                                                       
Query: 181 gggattgttcctcaggtatgcatagctccgggcttctgcagctttgcatatgggcacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggattgttcctcaggtatgcatagctccgggcttctgcagctttgcatatgggcacaga 440

                 
Query: 241 ggagac 246
           ||||||
Sbjct: 441 ggagac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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