Query= MSMg01no525_h16.b1 MSMg01no525_h16.b1 CHROMAT_FILE:
MSMg01no525_h16.b1 PHD_FILE: MSMg01no525_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:07 2005
(640 letters)
>mm_chr4_116577155_116578192
Length = 1038
Score = 1195 bits (618), Expect = 0.0
Identities = 634/640 (99%), Gaps = 2/640 (0%)
Strand = Plus / Plus
Query: 1 agttttgatctgggttaatggtacccatgaacaaagtggtttgattataagaatgtgtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttgatctgggttaatggtacccatgaacaaagtggtttgattataagaatgtgtag 260
Query: 61 caagcagtgaaataagttggtagtgttttaatacttagaagttagttgatgaaacagcag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 caagcagtgaaataagttggtagtgttttaatacttagaagttagttgatgagacagcag 320
Query: 121 ttggagacaaggacagatggcagatttctgaccttatgatactgccacgtaataaacgga 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttggagacaaggacagatggcagatttctgaccttatgatactgccacttaataaacgga 380
Query: 181 gaggactgatgaaggaaaacaactgtgtttggaaattggggaacagctttagatcagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggactgatgaaggaaaacaactgtgtttggaaattggggaacagctttagatcagact 440
Query: 241 tgaggttgaaatgtctattacttacccaagtagataagagagatttgaataaagaagaaa 300
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgaggttgaaatgcctattacttacccaagtagataagaga--tttgaataaagaagaaa 498
Query: 301 agatttcttatagaatgaaggcaagctgatgaagaaaatataagacctcctagcagtatt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 agatttcttatagaatgaaggcaaactgatgaagaaaatataagacctcctagcagtatt 558
Query: 361 atggacccaaataaaatggatggacctaaactttcattagcatcagctgatctaatccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atggacccaaataaaatggatggacctaaactttcattagcatcagctgatctaatccta 618
Query: 421 tgattgttgtttttgatttttgagacaaggtgtctctatgtagtcttggctgtcctggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgattgttgtttttgatttttgagacaaggtgtctctatgtagtcttggctgtcctggaa 678
Query: 481 ctcactatatagaccaggctgaccttgaattcacagagatatacctactgccttctgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctcactatatagaccaggctgaccttgaattcacagagatatacctactgccttctgagt 738
Query: 541 gctgggattacaggagcctgttaaacagagaatatggatcattctagggtaaagtttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctgggattacaggagcctgttaaacagagaatatggatcattctagggtaaagtttttt 798
Query: 601 gataggtagttgtcaaatagaaatagttgaataacaggtt 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gataggtagttgtcaaatagaaatagttgaataacaggtt 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1038
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1028
Effective search space: 647640
Effective search space used: 647640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_h16.g1 MSMg01no525_h16.g1 CHROMAT_FILE:
MSMg01no525_h16.g1 PHD_FILE: MSMg01no525_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:07 2005
(586 letters)
>mm_chr4_116756649_116757642
Length = 994
Score = 890 bits (460), Expect = 0.0
Identities = 499/516 (96%), Gaps = 8/516 (1%)
Strand = Plus / Minus
Query: 1 ttactatccaggacttgatctatgtaactgggtcaagatcctgagtttaccaagcctact 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 603 ttactaaccaggacttgatctatgtaactgggtcaagatcctgagtttaccaggcctact 544
Query: 61 catcactatgatcaagggagaagaggtcc-aactttgtcgctgatactatgtagcatgtc 119
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct: 543 catcactatgatcaagggagaggaggtccaaactttgtcgctgatactttgtagcatgtc 484
Query: 120 attgaagcatcctgctagtttccctgctttttctgtcaaccttggccatctactgcttga 179
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attgaagcatcccgctagtctccctgctttttctgtcaaccttggccatctactgcttga 424
Query: 180 gcaggcactcaaacttggctgccaggaattttgcagaaccctgggagtgctcagctgggg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 423 gcaggcactcaaacttggctgccaggaattttgcagaaccctgggagtgctcagttgggg 364
Query: 240 taagaagagtcaggggtaataatgtccctaggctg-------ggggctgtgtgcagctca 292
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 363 taagaagagtcaggtgtaataatgtccctaggctggggggctggggctgtgtgcagctca 304
Query: 293 atgacagagtgcacggtaggtgtgaggctcagtgctgtcaagaggggagctgaggatggc 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 303 atgacagagtgcacggtaggtgtgaggctcagtgctgtcaagaggggagctgagaatggc 244
Query: 353 tatgtaagtagtgctagcaaagggaggctagttagaagtcaccttattatttgttattat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tatgtaagtagtgctagcaaagggaggctagttagaagtcaccttattatttgttattat 184
Query: 413 tttaatttaattttttttattgacagtctcactatgcttctctggctagcctgtctcctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tttaatttaattttttttattgacagtctcactatgcttctctggctagcctgtctcctg 124
Query: 473 ggattaaaggagtgagccaccatgtctggtgctccc 508
||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggattaaaggagtgagccaccatgtctggtgctccc 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 994
Length adjustment: 10
Effective length of query: 576
Effective length of database: 984
Effective search space: 566784
Effective search space used: 566784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
