BAC Information

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BAC

Clone NameMSMg01-525I03
Chromosome4 (Build37)
Map Location 118,134,759 - 118,251,346
singlet/doubletdoublet
Overlap geneTie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik
Upstream gene4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl
Downstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525I03.T7 (MSMg01no525_i03.b1)MSMg01-525I03.TJ (MSMg01no525_i03.g1)
ACCAG595327AG595328
length748736
length of high quality
(start - end)
492 (68 - 559)433 (68 - 500)
definitionCHROMAT_FILE: MSMg01no525_i03.b1 PHD_FILE: MSMg01no525_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:09 2005CHROMAT_FILE: MSMg01no525_i03.g1 PHD_FILE: MSMg01no525_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,134,759 - 118,135,250)(118,250,914 - 118,251,346)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGATTTCTAGGACTACATAGAGAGATTCTTAATAAGTCAGGTGAGATG
GTATATGTGCATGCTTGTAAAGCCAGTACCAAAGACGTATTGATAACAGG
TCCCTGGGATCCAGCCTAACTTACTTGGCAAGTCCCAGGCCAGTGCTAGA
CCCTGTCTCAATAAAAACAGTGACAGCATGTGAGGAACGACACTTTTTTT
GTTTTTGTTATTATTGTTGTTGTTGTTTCGTTTTTGTTTTGCTGTTGTTG
TTCCCTGGTTCCAAGTGTACACACAAATGTGTACCTGCACATCAAGCTCC
TAAAGAAGACACCATTAAATAGAGGGCTGGGAAGAGAACTGGCTCTTGTA
ATTCTGAGCCCTCTTTATTTCCCTATCGGTCCAGATTTCCCAACCTCGGG
CAGTTTTATCGAATCAGAAAGTCTAAGTGTCGGTAGCTCTAGGCTCCAGA
ATTCTCTATCTCTCCATCTGGTTCCCAATATTGTCAGACATCCTTCTGCA
ATGAGTCCATTTATATTAGCACATCCGAACACTGTATCTTCCCCTTTCGT
CATTCTATTGACCTCAAATTGTTGTTTGCCTTGTGGTCAAATGGGCATGC
GTGTTCCTCTGTGTACAGCTGCTTATGCGAGCATGGAAATGGCTCCACCT
TTTTGTGGGTATTCCACTCTGGCCCGCCTCCCCTTTATTTATAAAGCA
ATGCGGGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTGTGGCCACACATGGGTGTCAGCATTACTT
AGGTGGGTTCTGGCACAGGCCCCTCTGCTGACCAGCTGTTGTGCATTAGG
TAATTTCTCAAAGCTGTCCTGTTCTTTCCTCGGAAACGAGGGGTTGGACG
GATCTTTGTCAGCCTGCATGATGTTTCTGCACAGGAAGTCTTGTATATGG
AGATGGAGCAGGGCTCTCTTCAGATTCTCAAAGAAGAAACTGACAAGAAA
GAGACCAGCCATTCCTAATGCAGAGAATCGTGACCCCCTCTTAGTCTAGC
GGCTTTCCTGCTTCCCACCCTGGTCCGCAGCAGCAAGCGTAGTTAGGTCA
TTGTCCTAGTTAAGGTTTCGATTGCTGCGAGGAAGCCCCATGACCAAAAG
TTAGTTAGGAAGGACAGAGTTTACTTAGCTTACACTTCCACACTGTAGTC
CATCACTGAAGGAAGACAGATCAGGAGCTCAAACAGGGGAGGAACCTGGA
GGCTGAAGCAGAAGCTATAGAGGAGTGCTGCTTACTGGCTTGCTCCTCAT
GGCTTGCTCAGCCCGCCATTTTTTTTCTTTTTTTCTTCTTCTCCAGACAT
GGTTTCTCCTGTTTAGCCCCGTTTGCCCTGGGAGTCCCTTTGAGACCAGG
TTGGGCCTCTAACTTTGTATTTCGCCTGCCCTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_i03.b1 MSMg01no525_i03.b1 CHROMAT_FILE:
MSMg01no525_i03.b1 PHD_FILE: MSMg01no525_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:09 2005
         (492 letters)



>mm_chr4_118134559_118135450
          Length = 892

 Score =  897 bits (464), Expect = 0.0
 Identities = 485/492 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagagagattcttaataagtcaggtgagatggtatatgtgcatgcttgtaaagccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagagagattcttaataagtcaggtgagatggtatatgtgcatgcttgtaaagccagt 260

                                                                       
Query: 61  accaaagacgtattgataacaggtccctgggatccagcctaacttacttggcaagtccca 120
           ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 261 accaaagacatattgataacagatccctgcgatccagcctaacttacttggcaagtccca 320

                                                                       
Query: 121 ggccagtgctagaccctgtctcaataaaaacagtgacagcatgtgaggaacgacactttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccagtgctagaccctgtctcaataaaaacagtgacagcatgtgaggaacgacactttt 380

                                                                       
Query: 181 tttgtttttgttattattgttgttgttgtttcgtttttgttttgctgttgttgttccctg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtttttgttattattgctgttgttgtttcgtttttgttttgctgttgttgttccctg 440

                                                                       
Query: 241 gttccaagtgtacacacaaatgtgtacctgcacatcaagctcctaaagaagacaccatta 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttccaagtgcacacacaaatgtgtacctgcacatcaagctcctaaagaagacaccatta 500

                                                                       
Query: 301 aatagagggctgggaagagaactggctcttgtaattctgagccctctttatttccctatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagagggctgggaagagaactggctcttgtaattctgagccctctttatttccctatc 560

                                                                       
Query: 361 ggtccagatttcccaacctcgggcagttttatcgaatcagaaagtctaagtgtcggtagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtccagatttcccaacctcgggcagttttatcgaatcagaaagtctaagtgtcggtagc 620

                                                                       
Query: 421 tctaggctccagaattctctatctctccatctggttcccaatattgtcagacatccttct 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tctaggctccagaattctctatctctccatctgtttcccaatattgtcagacatccttct 680

                       
Query: 481 gcaatgagtcca 492
           |||| |||||||
Sbjct: 681 gcaacgagtcca 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no525_i03.g1 MSMg01no525_i03.g1 CHROMAT_FILE:
MSMg01no525_i03.g1 PHD_FILE: MSMg01no525_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:09 2005
         (433 letters)



>mm_chr4_118250813_118251645
          Length = 833

 Score =  799 bits (413), Expect = 0.0
 Identities = 428/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtggccacacatgggtgtcagcattacttaggtgggttctggcacaggcccctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttctgtggccacacatgggtgtcagcattacttaggtgggttctggcacaggcccctctg 475

                                                                       
Query: 61  ctgaccagctgttgtgcattaggtaatttctcaaagctgtcctgttctttcctcggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 ctgaccagctgttgtgcattaggtaatttctcaaagctgtcctgttctttccttggaaac 415

                                                                       
Query: 121 gaggggttggacggatctttgtcagcctgcatgatgtttctgcacaggaagtcttgtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaggggttggacggatctttgtcagcctgcatgatgtttctgcacaggaagtcttgtata 355

                                                                       
Query: 181 tggagatggagcagggctctcttcagattctcaaagaagaaactgacaagaaagagacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tggagatggagcagggctctcttcagattctcaaagaagaaactgacaagaaagagacca 295

                                                                       
Query: 241 gccattcctaatgcagagaatcgtgaccccctcttagtctagcggctttcctgcttccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gccattcctaatgcagagaatcgtgaccccctcttagtctagcggctttcctgcttccca 235

                                                                       
Query: 301 ccctggtccgcagcagcaagcgtagttaggtcattgtcctagttaaggtttcgattgctg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 234 ccctggtccgcagcagcaagcgtagttaggtcattgtcctagttaaggtttcaattgctg 175

                                                                       
Query: 361 cgaggaagccccatgaccaaaagttagttaggaaggacagagtttacttagcttacactt 420
           |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct: 174 cgaggaagccccatgaccaagagttagttgggaaggacagagtttatttagcttacactt 115

                        
Query: 421 ccacactgtagtc 433
           |||||||||||||
Sbjct: 114 ccacactgtagtc 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)